# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ozfA 92 3.07e-16 1g9oA 91 7.60e-16 b.36.1.1 60400 2uzcA 88 1.09e-15 2he2A 102 1.32e-15 2eaqA 90 1.53e-15 2pktA 91 1.54e-15 1tp5A 119 1.80e-15 b.36.1.1 119305 2iwnA 97 1.83e-15 2qg1A 92 1.90e-15 2opgA 98 1.99e-15 2egoA 96 2.70e-15 1wf7A 103 3.20e-15 b.36.1.1 114577 2fneA 117 3.35e-15 b.36.1.1 133813 2jikA 101 3.46e-15 1pdr 99 3.54e-15 2he4A 90 3.78e-15 2awxA 105 3.81e-15 1n7eA 97 4.64e-15 b.36.1.1 91691 1qauA 112 4.76e-15 b.36.1.1 24779 1be9A 119 5.49e-15 b.36.1.1 24774 2fe5A 94 5.66e-15 b.36.1.1 133323 2i04A 85 7.49e-15 2jilA 97 8.52e-15 1x45A 98 9.11e-15 b.36.1.1 121679 2f0aA 98 9.78e-15 b.36.1.1 132661 2ocsA 88 9.84e-15 2i1nA 102 1.19e-14 2q9vA 90 1.27e-14 2pa1A 87 1.33e-14 2gzvA 114 1.45e-14 2f5yA 91 1.49e-14 b.36.1.1 133015 1qavA 90 2.06e-14 b.36.1.1 24777 1v5lA 103 2.34e-14 b.36.1.1 108378 1i92A 91 2.68e-14 b.36.1.1 61990 2q3gA 89 2.92e-14 1m5zA 91 3.28e-14 b.36.1.1 78676 1q3oA 109 4.30e-14 b.36.1.1 95700 2iwoA 120 5.52e-14 1kwaA 88 6.47e-14 b.36.1.1 24772 2h3lA 103 1.00e-13 b.36.1.1 136046 2h2bA 107 1.26e-13 1fc6A 388 1.28e-13 b.36.1.3,c.14.1.2 64738,64739 2vphA 100 1.57e-13 1nf3C 128 2.14e-13 b.36.1.1 85596 1ihjA 98 4.02e-13 b.36.1.1 62382 2fcfA 103 4.86e-13 b.36.1.1 133267 1b8qA 127 6.56e-13 b.36.1.1 24781 1mfgA 95 7.60e-13 b.36.1.1 79043 1r6jA 82 1.02e-12 b.36.1.1 97151 1l6oA 95 1.07e-12 b.36.1.1 84534 1qavB 115 1.45e-12 b.36.1.1 24780 2qkvA 96 2.17e-12 2rczA 81 3.31e-12 2reyA 100 7.33e-12 1ky9A 448 5.55e-11 b.36.1.4,b.47.1.1 73198,73199 3bpuA 88 5.79e-11 2p3wA 112 6.02e-09 1lcyA 325 1.49e-08 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 2.71e-08 b.36.1.4,b.47.1.1 112400,112401 2i6vA 87 4.49e-08 1y8tA 324 5.82e-08 b.36.1.4,b.47.1.1 122763,122764 1sotA 320 3.71e-07 b.36.1.4,b.47.1.1 105852,105853 1n6eA 1071 2.22e-05 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 2adzA 178 2.53e-05 b.55.1.1 126599 1k32A 1045 0.000138 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 0.001220 c.14.1.2 66425 2yzkA 178 0.4089 1oroA 213 0.4178 c.61.1.1 34093 2ps1A 226 0.4954 1y0bA 197 0.9058 c.61.1.1 122476 1rqpA 299 1.122 b.141.1.1,c.132.1.1 97754,97755 1lh0A 213 1.211 c.61.1.1 73896 1ao0A 459 2.396 c.61.1.1,d.153.1.1 34049,41816 2g8mA 264 2.596 2g8oA 264 2.599 d.117.1.1 134779 1ypvA 313 2.658 1zn8A 180 3.223 c.61.1.1 125376 2p1zA 180 3.517 1g0rA 293 3.783 c.68.1.6 34532 2cw5A 255 5.369 1ecfA 504 5.503 c.61.1.1,d.153.1.1 34053,41820 2q6kA 283 5.616 1dekA 241 6.195 c.37.1.1 31842 2dy0A 190 7.187 2q07A 306 7.587 1vchA 175 8.959 c.61.1.1 119980 1ev5A 264 9.275 d.117.1.1 40935 1opr 213 9.665 1vr5A 547 11.15 c.94.1.1 120437 1yb2A 275 11.62 c.66.1.13 122868 1l1qA 186 12.52 c.61.1.1 77653 1z7yA 322 13.53 c.79.1.1 124679 2igbA 179 15.17 1gph1 465 15.23 1bkpA 278 17.44 d.117.1.1 41029 1b02A 279 19.56 d.117.1.1 41035 1axwA 265 21.76 d.117.1.1 40938 1q33A 292 22.24 d.113.1.1 95657 1aiqA 264 22.99 d.117.1.1 40967 2aeeA 211 24.94 c.61.1.1 126620 2nooA 502 25.05 2vesA 299 26.46 1eudA 311 27.02 c.2.1.8,c.23.4.1 30312,31140 2bgxA 261 27.39 a.20.1.1,d.118.1.1 128504,128505 1f28A 297 29.52 d.117.1.1 59608 2tscA 264 31.08 d.117.1.1 40952 2guiA 194 31.11 c.55.3.5 135737 1u9yA 284 31.87 c.61.1.2,c.61.1.2 119655,119656 2d5wA 603 31.98 2o7iA 592 32.02 1p16A 395 34.64 b.40.4.6,d.142.2.3 87661,87662 1h5rA 293 35.38 c.68.1.6 65623 1uc2A 481 35.41 d.261.1.1 99161 2f4nA 273 35.94 2go3A 267 36.01 d.14.1.7,d.14.1.7 135422,135423 2yvaA 196 36.05 1ta9A 450 36.82 1evfA 264 36.88 d.117.1.1 40932 3bkxA 275 37.04 1qqqA 264 40.73 d.117.1.1 40931 1f6yA 262 43.20 c.1.21.2 29673 1j53A 186 46.66 c.55.3.5 77076 1ckmA 330 47.99 b.40.4.6,d.142.2.3 25358,41585 1o58A 303 51.53 c.79.1.1 92491 1hvyA 288 51.66 d.117.1.1 41049 1p5jA 372 56.53 c.79.1.1 104067 1dqpA 230 59.00 c.61.1.1 34069 1zq9A 285 59.42 c.66.1.24 125505 2i71A 400 61.76 1wd5A 208 62.59 c.61.1.1 114524 2plcA 274 63.30 c.1.18.2 29614 1omoA 322 65.50 c.2.1.13 104017 2scuA 288 66.88 c.2.1.8,c.23.4.1 30303,31131 1h4pA 408 70.38 c.1.8.3 90617 1qyrA 252 76.00 c.66.1.24 104657 2bi0A 337 76.14 d.38.1.4,d.38.1.4 128565,128566 1b5eA 246 78.37 d.117.1.1 41056 1zgzA 122 79.36 c.23.1.1 125065 2e7fA 262 79.46 2a9oA 120 82.25 c.23.1.1 126444 1xhfA 123 82.90 c.23.1.1 122003 2epgA 487 87.47 1ipaA 274 88.34 c.116.1.1,d.79.3.3 71254,71255 1fr3A 67 88.82 b.40.6.1 25436