# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ozfA	92	1.25e-13		
1g9oA	91	2.73e-13	b.36.1.1	60400
2he2A	102	7.59e-13		
2iwnA	97	8.70e-13		
2uzcA	88	9.87e-13		
2pktA	91	1.10e-12		
2opgA	98	1.14e-12		
2he4A	90	1.14e-12		
1pdr	99	1.17e-12		
2egoA	96	1.22e-12		
2jikA	101	1.27e-12		
2fneA	117	1.29e-12	b.36.1.1	133813
2qg1A	92	1.30e-12		
1tp5A	119	1.36e-12	b.36.1.1	119305
2eaqA	90	1.74e-12		
1wf7A	103	1.80e-12	b.36.1.1	114577
1qauA	112	2.20e-12	b.36.1.1	24779
2awxA	105	2.24e-12		
1n7eA	97	2.26e-12	b.36.1.1	91691
2f0aA	98	2.90e-12	b.36.1.1	132661
2fe5A	94	2.95e-12	b.36.1.1	133323
1x45A	98	3.02e-12	b.36.1.1	121679
2jilA	97	3.31e-12		
1be9A	119	3.33e-12	b.36.1.1	24774
2q9vA	90	3.88e-12		
2i04A	85	4.04e-12		
1i92A	91	4.31e-12	b.36.1.1	61990
2ocsA	88	4.55e-12		
2i1nA	102	4.80e-12		
1v5lA	103	6.37e-12	b.36.1.1	108378
2gzvA	114	6.86e-12		
1m5zA	91	7.86e-12	b.36.1.1	78676
1qavA	90	8.26e-12	b.36.1.1	24777
2q3gA	89	9.93e-12		
2pa1A	87	1.05e-11		
1q3oA	109	1.19e-11	b.36.1.1	95700
2f5yA	91	1.34e-11	b.36.1.1	133015
2iwoA	120	1.78e-11		
1kwaA	88	2.24e-11	b.36.1.1	24772
1fc6A	388	2.42e-11	b.36.1.3,c.14.1.2	64738,64739
2h3lA	103	2.56e-11	b.36.1.1	136046
1nf3C	128	3.12e-11	b.36.1.1	85596
2h2bA	107	3.76e-11		
1ihjA	98	5.50e-11	b.36.1.1	62382
2vphA	100	5.94e-11		
1b8qA	127	6.51e-11	b.36.1.1	24781
2fcfA	103	1.21e-10	b.36.1.1	133267
1l6oA	95	1.48e-10	b.36.1.1	84534
1r6jA	82	1.71e-10	b.36.1.1	97151
2rczA	81	2.04e-10		
2qkvA	96	2.27e-10		
1mfgA	95	2.32e-10	b.36.1.1	79043
2reyA	100	4.68e-10		
1qavB	115	5.89e-10	b.36.1.1	24780
3bpuA	88	2.26e-09		
1ky9A	448	2.86e-09	b.36.1.4,b.47.1.1	73198,73199
2p3wA	112	5.08e-07		
1lcyA	325	1.39e-06	b.36.1.4,b.47.1.1	73834,73835
1te0A	318	1.75e-06	b.36.1.4,b.47.1.1	112400,112401
1y8tA	324	2.44e-06	b.36.1.4,b.47.1.1	122763,122764
2i6vA	87	3.06e-06		
1sotA	320	9.12e-06	b.36.1.4,b.47.1.1	105852,105853
2adzA	178	0.000167	b.55.1.1	126599
1n6eA	1071	0.000435	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	80149,80150,80151,80152
1k32A	1045	0.001675	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.006337	c.14.1.2	66425
2ps1A	226	1.459		
2yzkA	178	1.834		
1rqpA	299	1.987	b.141.1.1,c.132.1.1	97754,97755
1oroA	213	2.317	c.61.1.1	34093
1ao0A	459	4.674	c.61.1.1,d.153.1.1	34049,41816
1y0bA	197	4.895	c.61.1.1	122476
2g8mA	264	5.113		
2cw5A	255	5.676		
2q6kA	283	6.081		
2g8oA	264	6.169	d.117.1.1	134779
1lh0A	213	6.992	c.61.1.1	73896
1ypvA	313	8.088		
2f4nA	273	10.01		
2p1zA	180	12.68		
1dekA	241	14.01	c.37.1.1	31842
1g0rA	293	14.17	c.68.1.6	34532
1opr	213	17.31		
1vchA	175	19.09	c.61.1.1	119980
1b02A	279	19.20	d.117.1.1	41035
1ecfA	504	19.91	c.61.1.1,d.153.1.1	34053,41820
1p5jA	372	20.40	c.79.1.1	104067
1ev5A	264	20.58	d.117.1.1	40935
2vesA	299	22.09		
1pwhA	327	22.32	c.79.1.1	95224
1z7yA	322	22.43	c.79.1.1	124679
1f28A	297	22.80	d.117.1.1	59608
2q07A	306	25.35		
1bkpA	278	26.49	d.117.1.1	41029
2dy0A	190	28.32		
2go3A	267	30.44	d.14.1.7,d.14.1.7	135422,135423
1axwA	265	30.56	d.117.1.1	40938
1aiqA	264	34.72	d.117.1.1	40967
2plcA	274	37.88	c.1.18.2	29614
2d5wA	603	39.18		
1ckmA	330	39.37	b.40.4.6,d.142.2.3	25358,41585
2guiA	194	39.39	c.55.3.5	135737
1vr5A	547	39.62	c.94.1.1	120437
1zn8A	180	42.17	c.61.1.1	125376
1gph1	465	45.77		
3bkxA	275	47.40		
1q33A	292	48.88	d.113.1.1	95657
2igbA	179	49.28		
2o7iA	592	54.62		
2tscA	264	54.77	d.117.1.1	40952
1f6yA	262	54.91	c.1.21.2	29673
1j53A	186	56.09	c.55.3.5	77076
2nooA	502	58.02		
1ta9A	450	58.93		
1o58A	303	60.50	c.79.1.1	92491
1u9yA	284	61.34	c.61.1.2,c.61.1.2	119655,119656
1p16A	395	63.55	b.40.4.6,d.142.2.3	87661,87662
1qqqA	264	65.40	d.117.1.1	40931
1dqpA	230	65.72	c.61.1.1	34069
1yb2A	275	66.26	c.66.1.13	122868
1wd5A	208	66.44	c.61.1.1	114524
1q7zA	566	67.19	c.1.21.2,c.1.26.1	96090,96091
1fr3A	67	67.25	b.40.6.1	25436
1uc2A	481	67.51	d.261.1.1	99161
1evfA	264	68.75	d.117.1.1	40932
1dy2A	180	69.76	d.169.1.5	42451
1vs0A	310	70.32		
1qyrA	252	72.81	c.66.1.24	104657
2gn0A	342	73.35		
1g2qA	187	81.02	c.61.1.1	65117
3bs5B	80	81.46		
1lam	484	83.44		
2yvaA	196	85.43		
1zq9A	285	85.69	c.66.1.24	125505
1eudA	311	86.59	c.2.1.8,c.23.4.1	30312,31140
2jbhA	225	88.81		
1koe	172	89.55