# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ozfA 92 4.02e-15 1g9oA 91 7.86e-15 b.36.1.1 60400 2uzcA 88 1.37e-14 2he2A 102 1.49e-14 2eaqA 90 1.59e-14 2opgA 98 2.13e-14 1tp5A 119 2.21e-14 b.36.1.1 119305 2pktA 91 2.44e-14 2egoA 96 2.56e-14 2fneA 117 2.75e-14 b.36.1.1 133813 2qg1A 92 3.08e-14 2iwnA 97 3.13e-14 1pdr 99 3.15e-14 2awxA 105 3.21e-14 2he4A 90 3.55e-14 2jikA 101 3.67e-14 1n7eA 97 4.13e-14 b.36.1.1 91691 1wf7A 103 4.97e-14 b.36.1.1 114577 2fe5A 94 5.75e-14 b.36.1.1 133323 2jilA 97 5.88e-14 2f0aA 98 6.11e-14 b.36.1.1 132661 1qauA 112 6.32e-14 b.36.1.1 24779 1be9A 119 6.87e-14 b.36.1.1 24774 2i04A 85 7.25e-14 1x45A 98 8.00e-14 b.36.1.1 121679 2i1nA 102 8.17e-14 2q9vA 90 8.80e-14 2ocsA 88 1.00e-13 2gzvA 114 1.23e-13 1v5lA 103 1.27e-13 b.36.1.1 108378 1qavA 90 1.75e-13 b.36.1.1 24777 1i92A 91 1.93e-13 b.36.1.1 61990 2pa1A 87 2.17e-13 1m5zA 91 2.30e-13 b.36.1.1 78676 2f5yA 91 2.35e-13 b.36.1.1 133015 2q3gA 89 2.73e-13 1q3oA 109 3.80e-13 b.36.1.1 95700 2iwoA 120 4.70e-13 1kwaA 88 5.20e-13 b.36.1.1 24772 1fc6A 388 7.22e-13 b.36.1.3,c.14.1.2 64738,64739 2h3lA 103 9.00e-13 b.36.1.1 136046 2h2bA 107 1.10e-12 1ihjA 98 1.26e-12 b.36.1.1 62382 1nf3C 128 1.33e-12 b.36.1.1 85596 2vphA 100 1.51e-12 1mfgA 95 3.96e-12 b.36.1.1 79043 2fcfA 103 4.90e-12 b.36.1.1 133267 1b8qA 127 5.60e-12 b.36.1.1 24781 1r6jA 82 5.71e-12 b.36.1.1 97151 1l6oA 95 6.63e-12 b.36.1.1 84534 2rczA 81 6.68e-12 2qkvA 96 1.52e-11 1qavB 115 1.62e-11 b.36.1.1 24780 2reyA 100 2.96e-11 1ky9A 448 7.10e-11 b.36.1.4,b.47.1.1 73198,73199 3bpuA 88 1.19e-10 2p3wA 112 2.92e-08 1lcyA 325 5.27e-08 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 6.67e-08 b.36.1.4,b.47.1.1 112400,112401 1y8tA 324 1.06e-07 b.36.1.4,b.47.1.1 122763,122764 2i6vA 87 2.39e-07 1sotA 320 4.72e-07 b.36.1.4,b.47.1.1 105852,105853 2adzA 178 3.67e-05 b.55.1.1 126599 1n6eA 1071 5.36e-05 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1k32A 1045 0.000213 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 0.003423 c.14.1.2 66425 2ps1A 226 0.6615 1oroA 213 0.6677 c.61.1.1 34093 2yzkA 178 1.157 1ao0A 459 1.229 c.61.1.1,d.153.1.1 34049,41816 1lh0A 213 1.812 c.61.1.1 73896 1y0bA 197 1.930 c.61.1.1 122476 1rqpA 299 2.454 b.141.1.1,c.132.1.1 97754,97755 2q6kA 283 3.891 1opr 213 4.296 2g8oA 264 4.625 d.117.1.1 134779 2g8mA 264 4.810 2p1zA 180 5.337 1ecfA 504 5.491 c.61.1.1,d.153.1.1 34053,41820 1g0rA 293 5.960 c.68.1.6 34532 2q07A 306 6.242 2cw5A 255 6.294 1ypvA 313 6.318 1vchA 175 7.305 c.61.1.1 119980 2f4nA 273 8.109 2igbA 179 9.692 1dekA 241 9.807 c.37.1.1 31842 1zn8A 180 11.46 c.61.1.1 125376 1b02A 279 12.92 d.117.1.1 41035 2dy0A 190 13.07 1bkpA 278 13.21 d.117.1.1 41029 1ev5A 264 13.28 d.117.1.1 40935 1f28A 297 14.39 d.117.1.1 59608 1gph1 465 16.14 1wd5A 208 18.45 c.61.1.1 114524 1z7yA 322 19.63 c.79.1.1 124679 2vesA 299 21.92 1q33A 292 22.29 d.113.1.1 95657 1p16A 395 22.78 b.40.4.6,d.142.2.3 87661,87662 1ckmA 330 26.25 b.40.4.6,d.142.2.3 25358,41585 2plcA 274 27.27 c.1.18.2 29614 2scuA 288 27.28 c.2.1.8,c.23.4.1 30303,31131 1ta9A 450 30.52 1o58A 303 30.81 c.79.1.1 92491 1eudA 311 30.93 c.2.1.8,c.23.4.1 30312,31140 1aiqA 264 31.23 d.117.1.1 40967 1yb2A 275 34.62 c.66.1.13 122868 1u9yA 284 35.83 c.61.1.2,c.61.1.2 119655,119656 1axwA 265 37.38 d.117.1.1 40938 1pwhA 327 37.88 c.79.1.1 95224 1fr3A 67 38.43 b.40.6.1 25436 2tscA 264 42.19 d.117.1.1 40952 1uc2A 481 43.30 d.261.1.1 99161 2guiA 194 45.51 c.55.3.5 135737 2go3A 267 45.68 d.14.1.7,d.14.1.7 135422,135423 1dy2A 180 46.41 d.169.1.5 42451 3bs5B 80 46.56 1p5jA 372 47.77 c.79.1.1 104067 1vr5A 547 49.68 c.94.1.1 120437 1qqqA 264 51.74 d.117.1.1 40931 2bgxA 261 52.27 a.20.1.1,d.118.1.1 128504,128505 1lam 484 52.31 3bkxA 275 52.67 1f6yA 262 53.44 c.1.21.2 29673 1g2qA 187 54.36 c.61.1.1 65117 1evfA 264 54.41 d.117.1.1 40932 1l1qA 186 55.85 c.61.1.1 77653 1x0gA 112 57.34 1j53A 186 57.55 c.55.3.5 77076 1vs0A 310 60.03 2jbhA 225 60.87 2gn0A 342 62.07 2yvaA 196 63.63 1ecfB 504 64.88 c.61.1.1,d.153.1.1 34054,41821 1zeqX 84 65.01 1omoA 322 71.01 c.2.1.13 104017 1s98A 107 77.73 b.124.1.1 105377 1bllE 488 79.66 c.50.1.1,c.56.5.3 33170,33833 1qyrA 252 80.58 c.66.1.24 104657 2i71A 400 82.66 2e7fA 262 83.09 3ce9A 354 84.62 1h4pA 408 84.91 c.1.8.3 90617 1h9jA 145 85.45 b.40.6.2,b.40.6.2 60829,60830 1r94A 118 88.42 b.124.1.1 97251 2f01A 127 88.47 b.61.1.1 132647