# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ozfA 92 1.67e-12 1g9oA 91 3.22e-12 b.36.1.1 60400 2he2A 102 4.25e-12 2qg1A 92 6.09e-12 2uzcA 88 6.50e-12 2iwnA 97 6.54e-12 1tp5A 119 7.95e-12 b.36.1.1 119305 1pdr 99 7.97e-12 2fneA 117 8.31e-12 b.36.1.1 133813 2opgA 98 8.49e-12 2jilA 97 8.66e-12 2awxA 105 9.01e-12 2he4A 90 9.22e-12 2jikA 101 9.73e-12 2egoA 96 1.05e-11 2pktA 91 1.20e-11 1wf7A 103 1.39e-11 b.36.1.1 114577 1n7eA 97 1.64e-11 b.36.1.1 91691 2fe5A 94 1.69e-11 b.36.1.1 133323 1be9A 119 1.79e-11 b.36.1.1 24774 2eaqA 90 1.89e-11 1qavA 90 2.02e-11 b.36.1.1 24777 2gzvA 114 2.17e-11 2i1nA 102 2.34e-11 1x45A 98 3.23e-11 b.36.1.1 121679 1qauA 112 3.27e-11 b.36.1.1 24779 1m5zA 91 4.46e-11 b.36.1.1 78676 2i04A 85 4.63e-11 2q9vA 90 4.67e-11 1i92A 91 4.94e-11 b.36.1.1 61990 1q3oA 109 5.21e-11 b.36.1.1 95700 2pa1A 87 5.72e-11 2q3gA 89 6.60e-11 2h2bA 107 6.64e-11 2ocsA 88 6.83e-11 1nf3C 128 6.85e-11 b.36.1.1 85596 1v5lA 103 6.92e-11 b.36.1.1 108378 2f0aA 98 7.37e-11 b.36.1.1 132661 2iwoA 120 9.81e-11 2h3lA 103 1.22e-10 b.36.1.1 136046 1kwaA 88 1.37e-10 b.36.1.1 24772 2f5yA 91 2.06e-10 b.36.1.1 133015 2vphA 100 3.82e-10 1ihjA 98 3.92e-10 b.36.1.1 62382 1l6oA 95 4.19e-10 b.36.1.1 84534 2fcfA 103 4.24e-10 b.36.1.1 133267 1fc6A 388 5.40e-10 b.36.1.3,c.14.1.2 64738,64739 1b8qA 127 6.09e-10 b.36.1.1 24781 2qkvA 96 6.82e-10 1mfgA 95 8.45e-10 b.36.1.1 79043 1r6jA 82 2.42e-09 b.36.1.1 97151 1qavB 115 3.87e-09 b.36.1.1 24780 2reyA 100 1.00e-08 2rczA 81 1.83e-08 3bpuA 88 3.33e-08 1ky9A 448 1.76e-07 b.36.1.4,b.47.1.1 73198,73199 2p3wA 112 2.21e-06 1lcyA 325 3.75e-06 b.36.1.4,b.47.1.1 73834,73835 2i6vA 87 6.52e-06 1te0A 318 1.86e-05 b.36.1.4,b.47.1.1 112400,112401 1y8tA 324 6.28e-05 b.36.1.4,b.47.1.1 122763,122764 1sotA 320 0.000200 b.36.1.4,b.47.1.1 105852,105853 1n6eA 1071 0.005575 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1k32A 1045 0.01465 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2adzA 178 0.02703 b.55.1.1 126599 1j7xA 302 0.04637 c.14.1.2 66425 1oroA 213 2.007 c.61.1.1 34093 1lh0A 213 3.673 c.61.1.1 73896 1rqpA 299 5.707 b.141.1.1,c.132.1.1 97754,97755 1opr 213 6.151 2ps1A 226 9.038 2g8mA 264 12.59 1ecfA 504 15.68 c.61.1.1,d.153.1.1 34053,41820 2g8oA 264 16.01 d.117.1.1 134779 1dekA 241 16.89 c.37.1.1 31842 2q07A 306 17.58 1ypvA 313 19.06 2p1zA 180 23.93 1ao0A 459 24.98 c.61.1.1,d.153.1.1 34049,41816 1f28A 297 25.23 d.117.1.1 59608 1xm7A 195 25.24 d.159.1.8 115473 1g0rA 293 25.26 c.68.1.6 34532 2cw5A 255 26.48 1pt6A 213 29.18 c.62.1.1 95091 1b02A 279 30.31 d.117.1.1 41035 1ev5A 264 30.34 d.117.1.1 40935 1h4pA 408 31.88 c.1.8.3 90617 2q6kA 283 32.51 1bkpA 278 34.37 d.117.1.1 41029 1q33A 292 34.51 d.113.1.1 95657 1kk1A 410 35.66 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1wraA 308 37.79 d.157.1.8 121190 1ct5A 256 41.35 c.1.6.2 28663 1gph1 465 42.48 1ckmA 330 44.12 b.40.4.6,d.142.2.3 25358,41585 2guiA 194 44.27 c.55.3.5 135737 1s0uA 408 45.24 b.43.3.1,b.44.1.1,c.37.1.8 98302,98303,98304 2e7fA 262 46.84 2zbvA 263 47.61 1ta9A 450 48.72 1egaA 301 49.67 c.37.1.8,d.52.3.1 32150,38836 1puiA 210 52.08 c.37.1.8 88292 1f6yA 262 55.78 c.1.21.2 29673 1p16A 395 56.45 b.40.4.6,d.142.2.3 87661,87662 1se8A 301 57.47 b.40.4.3 105448 2jbmA 299 58.40 2ikkA 173 63.53 2igbA 179 67.86 3bs5B 80 71.19 1vb3A 428 71.20 c.79.1.1 119942 1j53A 186 71.49 c.55.3.5 77076 1ad4A 266 74.02 c.1.21.1 29670 2pd2A 108 75.16 1sviA 195 75.53 c.37.1.8 106048 1z7yA 322 76.26 c.79.1.1 124679 2yzkA 178 79.94 2p19A 149 84.69 1ad1A 266 88.86 c.1.21.1 29668