# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ozfA 92 2.75e-16 1g9oA 91 3.14e-16 b.36.1.1 60400 2fe5A 94 3.15e-15 b.36.1.1 133323 2jilA 97 4.89e-15 2iwnA 97 4.91e-15 2opgA 98 5.41e-15 2egoA 96 7.42e-15 2jikA 101 7.90e-15 2he4A 90 1.09e-14 2qg1A 92 1.54e-14 2i1nA 102 1.58e-14 2awxA 105 2.56e-14 2gzvA 114 2.72e-14 1q3oA 109 2.90e-14 b.36.1.1 95700 1i92A 91 2.99e-14 b.36.1.1 61990 2fneA 117 3.53e-14 b.36.1.1 133813 2f5yA 91 4.04e-14 b.36.1.1 133015 1n7eA 97 4.54e-14 b.36.1.1 91691 1qavA 90 5.07e-14 b.36.1.1 24777 2pktA 91 6.69e-14 2h2bA 107 7.12e-14 2uzcA 88 7.36e-14 1m5zA 91 7.62e-14 b.36.1.1 78676 1tp5A 119 1.12e-13 b.36.1.1 119305 2he2A 102 1.42e-13 2ocsA 88 1.76e-13 2q3gA 89 1.85e-13 1ihjA 98 1.91e-13 b.36.1.1 62382 1nf3C 128 2.10e-13 b.36.1.1 85596 2h3lA 103 2.43e-13 b.36.1.1 136046 1be9A 119 3.57e-13 b.36.1.1 24774 1pdr 99 4.10e-13 1x45A 98 4.39e-13 b.36.1.1 121679 1mfgA 95 5.76e-13 b.36.1.1 79043 2fcfA 103 6.54e-13 b.36.1.1 133267 1wf7A 103 1.03e-12 b.36.1.1 114577 1r6jA 82 1.74e-12 b.36.1.1 97151 2qkvA 96 2.36e-12 2i04A 85 3.58e-12 2iwoA 120 4.33e-12 1qauA 112 5.06e-12 b.36.1.1 24779 1l6oA 95 5.21e-12 b.36.1.1 84534 1kwaA 88 1.26e-11 b.36.1.1 24772 2q9vA 90 1.81e-11 2pa1A 87 5.02e-11 2f0aA 98 6.23e-11 b.36.1.1 132661 2reyA 100 7.88e-11 2vphA 100 2.53e-10 2eaqA 90 3.19e-10 1v5lA 103 3.40e-10 b.36.1.1 108378 1qavB 115 3.66e-10 b.36.1.1 24780 1fc6A 388 7.41e-10 b.36.1.3,c.14.1.2 64738,64739 1b8qA 127 1.38e-09 b.36.1.1 24781 3bpuA 88 4.51e-09 2rczA 81 9.84e-09 2p3wA 112 5.96e-07 1lcyA 325 7.20e-07 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 1.21e-06 b.36.1.4,b.47.1.1 112400,112401 2i6vA 87 1.72e-06 1y8tA 324 3.85e-06 b.36.1.4,b.47.1.1 122763,122764 1n6eA 1071 0.004259 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1ky9A 448 0.008512 b.36.1.4,b.47.1.1 73198,73199 1k32A 1045 0.02831 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1sotA 320 1.190 b.36.1.4,b.47.1.1 105852,105853 1lh0A 213 1.953 c.61.1.1 73896 2ps1A 226 2.450 2dy0A 190 2.481 1opr 213 4.771 3bdiA 207 7.282 1y0bA 197 7.449 c.61.1.1 122476 2bkfA 87 8.947 d.15.2.2 128699 2dstA 131 11.14 1ha1 184 13.91 1o6dA 163 15.05 c.116.1.3 92567 2j3tD 219 17.67 2gf9A 189 17.74 3sxlA 184 18.74 d.58.7.1,d.58.7.1 39173,39174 2qyaA 124 19.93 1cjwA 166 19.93 d.108.1.1 40818 1yioA 208 20.06 a.4.6.2,c.23.1.1 123326,123327 1g2qA 187 20.83 c.61.1.1 65117 1wj6A 101 20.83 d.15.2.2 114693 1z2aA 168 21.27 c.37.1.8 124374 1ao3A 187 21.34 c.62.1.1 34134 1oixA 191 25.15 c.37.1.8 118710 1fxlA 167 25.94 d.58.7.1,d.58.7.1 39183,39184 1oroA 213 26.57 c.61.1.1 34093 1ne9A 335 27.44 d.108.1.4,d.108.1.4 91839,91840 1u94A 356 28.28 c.37.1.11,d.48.1.1 107743,107744 2f9lA 199 30.03 c.37.1.8 133166 2yvaA 196 34.82 2h7aA 110 34.98 2bexA 460 35.78 c.10.1.1 128398 1cq3A 233 36.24 b.27.1.1 23923 1yvkA 163 36.34 d.108.1.1 124101 2r7hA 177 37.54 1tiqA 180 39.63 d.108.1.1 107010 1zn8A 180 40.43 c.61.1.1 125376 1qw2A 102 40.65 d.249.1.1 96456 1l3kA 196 42.35 d.58.7.1,d.58.7.1 73539,73540 1a3cA 181 42.35 c.61.1.1 34095 1q0rA 298 42.46 c.69.1.28 95508 2raaA 204 42.92 1qm4A 396 43.33 d.130.1.1,d.130.1.1,d.130.1.1 41350,41351,41352 2bcgY 206 44.40 c.37.1.8 128285 2a3nA 355 45.92 2bswA 146 47.96 d.108.1.1 129127 2g6bA 180 48.36 c.37.1.8 134701 1w1wA 430 48.79 c.37.1.12 114080 2aexA 346 48.80 1kuxA 207 49.16 d.108.1.1 73021 2dvzA 314 52.02 2e3jA 356 53.70 1vc3B 97 53.93 1ng5A 215 55.13 b.100.1.1 91867 1s3zA 165 56.33 d.108.1.1 105250 2izzA 322 57.08 2o38A 120 58.10 1z0jA 170 58.57 c.37.1.8 124319 2yzsA 315 59.51 2pocA 367 60.11 1z4eA 153 61.75 d.108.1.1 124431 1luzA 88 61.94 b.40.4.5 74271 1a62A 130 62.36 a.140.3.1,b.40.4.5 64708,64709 2jdcA 146 65.72 2dxqA 150 65.72 2o2gA 223 65.81 1y0eA 223 66.14 c.1.2.5 116297 1vimA 200 66.21 c.80.1.3 100758 1b6bA 174 67.04 d.108.1.1 40819 1pl8A 356 67.83 b.35.1.2,c.2.1.1 94878,94879 1tk9A 188 67.90 c.80.1.3 107082 1n3yA 198 68.22 c.62.1.1 79976 2cw5A 255 69.52 2epgA 487 70.11 1wmhA 89 70.46 d.15.2.2 114744 2b8eA 273 71.87 c.108.1.7,d.220.1.1 128068,128069 2iyvA 184 72.08 c.37.1.2 137812 1xqwA 293 75.29 2c3zA 222 77.83 1viaA 175 78.12 c.37.1.2 100754 1mtzA 293 82.92 c.69.1.7 79467 2z0tA 109 83.97 1cvjA 190 84.27 d.58.7.1,d.58.7.1 39191,39192 3cbnA 151 84.77 2orwA 184 85.82 2fe7A 166 86.90 d.108.1.1 133325 1qstA 160 88.22 d.108.1.1 40804 2gruA 368 88.45 1wwzA 159 89.67 d.108.1.1 121380 1l0cA 207 89.88 d.108.1.1 73393 1t0qC 86 89.97 d.15.12.1 106222