# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g9oA 91 1.11e-13 b.36.1.1 60400 2he2A 102 1.79e-13 2he4A 90 1.98e-13 2ozfA 92 2.08e-13 1tp5A 119 2.11e-13 b.36.1.1 119305 2v90A 96 4.32e-13 2qg1A 92 7.16e-13 2fneA 117 7.61e-13 b.36.1.1 133813 2awxA 105 8.38e-13 2ocsA 88 9.05e-13 2iwnA 97 9.37e-13 2i1nA 102 9.78e-13 2opgA 98 1.00e-12 2fe5A 94 1.27e-12 b.36.1.1 133323 2jilA 97 1.59e-12 1qauA 112 1.71e-12 b.36.1.1 24779 1n7eA 97 1.91e-12 b.36.1.1 91691 2f5yA 91 1.98e-12 b.36.1.1 133015 2jikA 101 2.16e-12 1nf3C 128 2.43e-12 b.36.1.1 85596 2pa1A 87 2.51e-12 1qavA 90 2.71e-12 b.36.1.1 24777 2pktA 91 3.43e-12 2q3gA 89 3.60e-12 1q3oA 109 3.65e-12 b.36.1.1 95700 2uzcA 88 3.72e-12 2iwoA 120 4.52e-12 1kwaA 88 5.61e-12 b.36.1.1 24772 1ihjA 98 7.35e-12 b.36.1.1 62382 2qkvA 96 7.49e-12 2egoA 96 7.69e-12 2fcfA 103 8.49e-12 b.36.1.1 133267 2q9vA 90 9.47e-12 2h2bA 107 9.58e-12 1wf7A 103 1.02e-11 b.36.1.1 114577 2i04A 85 1.20e-11 2f0aA 98 1.92e-11 b.36.1.1 132661 1fc6A 388 1.92e-11 b.36.1.3,c.14.1.2 64738,64739 1x45A 98 2.35e-11 b.36.1.1 121679 2reyA 100 2.42e-11 2vphA 100 2.74e-11 1r6jA 82 3.05e-11 b.36.1.1 97151 2eaqA 90 4.29e-11 2gzvA 114 5.65e-11 2h3lA 103 1.03e-10 b.36.1.1 136046 3bpuA 88 1.49e-10 1mfgA 95 2.37e-10 b.36.1.1 79043 2rczA 81 4.75e-10 1y8tA 324 1.09e-06 b.36.1.4,b.47.1.1 122763,122764 2p3wA 112 1.98e-06 1te0A 318 6.03e-06 b.36.1.4,b.47.1.1 112400,112401 1lcyA 325 1.55e-05 b.36.1.4,b.47.1.1 73834,73835 1j7xA 302 0.001342 c.14.1.2 66425 1k32A 1045 0.004789 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2i6vA 87 0.5752 2g8oA 264 4.313 d.117.1.1 134779 2g8mA 264 5.063 1bkpA 278 5.950 d.117.1.1 41029 1ypvA 313 6.854 1w30A 201 9.171 c.61.1.1 114118 2zbvA 263 9.701 2cw5A 255 12.60 2q6kA 283 13.36 1qqqA 264 13.81 d.117.1.1 40931 1u9yA 284 15.11 c.61.1.2,c.61.1.2 119655,119656 2f4nA 273 18.32 2adzA 178 19.30 b.55.1.1 126599 1g2qA 187 20.93 c.61.1.1 65117 2igbA 179 21.38 1l3kA 196 21.60 d.58.7.1,d.58.7.1 73539,73540 1ev5A 264 21.70 d.117.1.1 40935 1l1qA 186 21.87 c.61.1.1 77653 1f28A 297 23.60 d.117.1.1 59608 1v9sA 208 24.68 c.61.1.1 119894 2og9A 393 24.90 1f5nA 592 26.88 a.114.1.1,c.37.1.8 19077,32152 1dkuA 317 26.98 c.61.1.2,c.61.1.2 34118,34119 2i62A 265 27.99 1rqpA 299 28.89 b.141.1.1,c.132.1.1 97754,97755 1mi8A 158 30.46 b.86.1.2 91279 2p1zA 180 31.69 2j3tD 219 35.60 2jbhA 225 37.78 1vctA 205 40.95 a.7.12.1,d.286.1.1 119986,119987 2gsmB 262 41.15 b.6.1.2,f.17.2.1 135590,135591 1a3c 181 43.35 2hcrA 326 46.83 3bs5A 106 48.98 2gm5A 139 49.38 1dmgA 225 50.00 c.22.1.1 31036 1h5rA 293 50.78 c.68.1.6 65623 1lh0A 213 51.95 c.61.1.1 73896 2yzkA 178 52.17 4dfrA 159 52.30 c.71.1.1 34822 1oroA 213 54.32 c.61.1.1 34093 1y0bA 197 57.54 c.61.1.1 122476 1cjbA 231 57.73 c.61.1.1 34079 1l5jA 865 62.80 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 1zn8A 180 63.99 c.61.1.1 125376 1s98A 107 69.04 b.124.1.1 105377 1fi2A 201 70.13 b.82.1.2 59845 1vchA 175 72.09 c.61.1.1 119980 2ad9A 119 72.60 d.58.7.1 126580 2z1cA 75 77.43 2vesA 299 79.29 1ra9 159 81.12 2rslA 140 81.68 c.53.1.1 33345 1zlqA 502 82.44 c.94.1.1 125253 1fitA 147 85.83 d.13.1.1 37499 1tzfA 259 86.33 c.68.1.13 107476 1eceA 358 87.94 c.1.8.3 28813 2yzqA 282 88.42