# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g9oA 91 2.37e-14 b.36.1.1 60400 2he2A 102 3.66e-14 1tp5A 119 4.56e-14 b.36.1.1 119305 2ozfA 92 4.74e-14 2he4A 90 6.10e-14 2v90A 96 1.30e-13 2i1nA 102 1.40e-13 2ocsA 88 1.54e-13 2fneA 117 1.63e-13 b.36.1.1 133813 2awxA 105 1.80e-13 2fe5A 94 1.97e-13 b.36.1.1 133323 2qg1A 92 2.26e-13 2iwnA 97 2.47e-13 2jikA 101 2.77e-13 1n7eA 97 2.97e-13 b.36.1.1 91691 1qauA 112 3.16e-13 b.36.1.1 24779 2opgA 98 3.73e-13 2f5yA 91 3.77e-13 b.36.1.1 133015 2jilA 97 3.91e-13 1qavA 90 4.69e-13 b.36.1.1 24777 2q3gA 89 5.65e-13 2pktA 91 5.67e-13 2pa1A 87 6.18e-13 1nf3C 128 6.50e-13 b.36.1.1 85596 2uzcA 88 7.12e-13 2qkvA 96 7.88e-13 1q3oA 109 9.62e-13 b.36.1.1 95700 1kwaA 88 1.20e-12 b.36.1.1 24772 1wf7A 103 1.22e-12 b.36.1.1 114577 2iwoA 120 1.24e-12 2q9vA 90 1.47e-12 1ihjA 98 1.50e-12 b.36.1.1 62382 2fcfA 103 1.74e-12 b.36.1.1 133267 2i04A 85 1.98e-12 2egoA 96 2.02e-12 2h2bA 107 2.12e-12 1x45A 98 3.68e-12 b.36.1.1 121679 2reyA 100 3.77e-12 1fc6A 388 3.99e-12 b.36.1.3,c.14.1.2 64738,64739 2f0aA 98 4.64e-12 b.36.1.1 132661 2vphA 100 4.81e-12 1r6jA 82 6.16e-12 b.36.1.1 97151 2gzvA 114 6.83e-12 2rczA 81 1.12e-11 2eaqA 90 1.49e-11 2h3lA 103 2.18e-11 b.36.1.1 136046 1mfgA 95 3.23e-11 b.36.1.1 79043 3bpuA 88 4.26e-11 1y8tA 324 4.02e-07 b.36.1.4,b.47.1.1 122763,122764 2p3wA 112 1.64e-06 1te0A 318 3.57e-06 b.36.1.4,b.47.1.1 112400,112401 1lcyA 325 1.17e-05 b.36.1.4,b.47.1.1 73834,73835 1j7xA 302 0.001042 c.14.1.2 66425 1k32A 1045 0.002290 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2i6vA 87 0.1670 1l3kA 196 6.330 d.58.7.1,d.58.7.1 73539,73540 2g8oA 264 8.294 d.117.1.1 134779 2zbvA 263 9.005 1bkpA 278 9.264 d.117.1.1 41029 1w30A 201 9.373 c.61.1.1 114118 2g8mA 264 9.699 2cw5A 255 13.79 1u9yA 284 14.02 c.61.1.2,c.61.1.2 119655,119656 1qqqA 264 14.54 d.117.1.1 40931 2adzA 178 15.46 b.55.1.1 126599 2igbA 179 15.50 2q6kA 283 16.26 1ypvA 313 19.92 1ev5A 264 22.11 d.117.1.1 40935 2jbhA 225 22.34 1l1qA 186 24.63 c.61.1.1 77653 1dkuA 317 25.18 c.61.1.2,c.61.1.2 34118,34119 2f4nA 273 25.34 1a3c 181 26.57 1rqpA 299 27.03 b.141.1.1,c.132.1.1 97754,97755 2p1zA 180 31.36 1g2qA 187 33.32 c.61.1.1 65117 1oroA 213 33.55 c.61.1.1 34093 2hcrA 326 36.52 2vesA 299 38.23 2og9A 393 38.36 1dmgA 225 39.72 c.22.1.1 31036 2j3tD 219 41.20 1lh0A 213 41.43 c.61.1.1 73896 1v9sA 208 48.61 c.61.1.1 119894 1f28A 297 48.71 d.117.1.1 59608 2d5wA 603 49.43 1wd5A 208 50.17 c.61.1.1 114524 1zlqA 502 50.29 c.94.1.1 125253 2o38A 120 53.72 1fitA 147 55.39 d.13.1.1 37499 1vchA 175 58.10 c.61.1.1 119980 3bs5A 106 61.36 2gsmB 262 63.49 b.6.1.2,f.17.2.1 135590,135591 1mi8A 158 67.44 b.86.1.2 91279 1vctA 205 67.50 a.7.12.1,d.286.1.1 119986,119987 3bpkA 206 70.57 1a3cA 181 72.55 c.61.1.1 34095 1eceA 358 80.28 c.1.8.3 28813 1cjbA 231 80.64 c.61.1.1 34079 1t6t1 118 86.06 1p42A 270 87.52 d.14.1.7,d.14.1.7 87754,87755 2go3A 267 89.14 d.14.1.7,d.14.1.7 135422,135423 2gm5A 139 89.51