# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g9oA 91 1.24e-13 b.36.1.1 60400 2ozfA 92 1.48e-13 1tp5A 119 1.61e-13 b.36.1.1 119305 2he4A 90 2.19e-13 2he2A 102 2.59e-13 2v90A 96 3.04e-13 2ocsA 88 7.17e-13 1n7eA 97 7.78e-13 b.36.1.1 91691 2fneA 117 8.83e-13 b.36.1.1 133813 2jikA 101 1.08e-12 2iwnA 97 1.16e-12 2i1nA 102 1.40e-12 2opgA 98 1.41e-12 2qg1A 92 1.41e-12 2q3gA 89 1.46e-12 2awxA 105 1.57e-12 2fe5A 94 1.70e-12 b.36.1.1 133323 2jilA 97 2.29e-12 1nf3C 128 2.37e-12 b.36.1.1 85596 1qavA 90 2.46e-12 b.36.1.1 24777 1qauA 112 2.77e-12 b.36.1.1 24779 2f5yA 91 2.89e-12 b.36.1.1 133015 2pa1A 87 3.05e-12 2pktA 91 3.08e-12 2uzcA 88 3.14e-12 1wf7A 103 3.36e-12 b.36.1.1 114577 1q3oA 109 3.74e-12 b.36.1.1 95700 2egoA 96 4.88e-12 1kwaA 88 6.07e-12 b.36.1.1 24772 2iwoA 120 6.81e-12 2qkvA 96 7.94e-12 2q9vA 90 8.73e-12 1ihjA 98 9.15e-12 b.36.1.1 62382 1fc6A 388 1.10e-11 b.36.1.3,c.14.1.2 64738,64739 2fcfA 103 1.36e-11 b.36.1.1 133267 2h2bA 107 1.36e-11 1r6jA 82 1.70e-11 b.36.1.1 97151 2i04A 85 1.84e-11 2f0aA 98 2.04e-11 b.36.1.1 132661 1x45A 98 2.06e-11 b.36.1.1 121679 2vphA 100 2.66e-11 2gzvA 114 2.83e-11 2rczA 81 3.25e-11 2h3lA 103 5.12e-11 b.36.1.1 136046 2reyA 100 5.20e-11 2eaqA 90 6.26e-11 1mfgA 95 1.90e-10 b.36.1.1 79043 3bpuA 88 2.15e-10 1y8tA 324 1.43e-06 b.36.1.4,b.47.1.1 122763,122764 2p3wA 112 1.89e-06 1lcyA 325 9.01e-06 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 1.18e-05 b.36.1.4,b.47.1.1 112400,112401 1k32A 1045 0.000713 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 0.004631 c.14.1.2 66425 2i6vA 87 0.07045 1g2qA 187 3.137 c.61.1.1 65117 2zbvA 263 4.230 2aeeA 211 5.771 c.61.1.1 126620 1rqpA 299 6.546 b.141.1.1,c.132.1.1 97754,97755 1zn8A 180 6.614 c.61.1.1 125376 2cw5A 255 7.422 1u9yA 284 7.573 c.61.1.2,c.61.1.2 119655,119656 1f28A 297 7.656 d.117.1.1 59608 1y0bA 197 9.105 c.61.1.1 122476 2p1zA 180 10.06 1vchA 175 10.32 c.61.1.1 119980 1l1qA 186 11.21 c.61.1.1 77653 2j3tD 219 11.98 2f4nA 273 12.43 1cjbA 231 12.46 c.61.1.1 34079 2z1cA 75 12.69 1vctA 205 13.88 a.7.12.1,d.286.1.1 119986,119987 1o57A 291 14.12 a.4.5.40,c.61.1.1 92483,92484 2dpyA 438 15.35 1vs0A 310 15.70 1dkuA 317 15.74 c.61.1.2,c.61.1.2 34118,34119 1ypvA 313 16.64 2q6kA 283 17.26 1bkpA 278 17.58 d.117.1.1 41029 2g8oA 264 17.92 d.117.1.1 134779 2g8mA 264 18.73 2o38A 120 20.23 2jbhA 225 21.44 2hcrA 326 22.15 1aj2A 282 22.52 c.1.21.1 29665 1eceA 358 24.81 c.1.8.3 28813 1l3kA 196 25.93 d.58.7.1,d.58.7.1 73539,73540 2a6cA 83 27.38 a.35.1.13 126236 2pi6A 361 27.78 1mi8A 158 29.56 b.86.1.2 91279 1hgxA 183 31.01 c.61.1.1 34027 1fsgA 233 31.52 c.61.1.1 34029 1wd5A 208 33.45 c.61.1.1 114524 1t6t1 118 33.64 1i0lA 221 35.27 c.61.1.1 71096 2aefA 234 35.69 1fr3A 67 37.91 b.40.6.1 25436 1kgsA 225 39.23 a.4.6.1,c.23.1.1 68596,68597 2igbA 179 40.17 2yzkA 178 40.70 1w30A 201 41.04 c.61.1.1 114118 1oj7A 408 41.47 e.22.1.2 103971 1z7gA 217 41.78 c.61.1.1 124624 3bs5A 106 42.59 2gebA 185 45.11 2hykA 245 45.59 1ad1A 266 45.88 c.1.21.1 29668 1vdmA 153 46.20 c.61.1.1 119994 1dmgA 225 49.71 c.22.1.1 31036 2e55A 208 50.81 2plcA 274 51.40 c.1.18.2 29614 1at0 145 53.16 1mvoA 136 53.23 c.23.1.1 79513 1srrA 124 54.07 c.23.1.1 31110 1a3c 181 54.47 3dfrA 162 54.87 c.71.1.1 34880 2acfA 182 54.99 c.50.1.2 126547 3bpkA 206 58.81 2v95A 371 59.15 2gsmB 262 59.65 b.6.1.2,f.17.2.1 135590,135591 2vefA 314 60.32 2glwA 92 60.51 1xm7A 195 63.00 d.159.1.8 115473 1l7bA 92 65.19 c.15.1.2 91053 1yioA 208 66.46 a.4.6.2,c.23.1.1 123326,123327 3bs7A 78 66.87 1qqqA 264 67.06 d.117.1.1 40931 1eovA 487 67.57 b.40.4.1,d.104.1.1 25239,40760 1fi2A 201 69.92 b.82.1.2 59845 1o4uA 285 70.63 c.1.17.1,d.41.2.1 86624,86625 1at0A 145 70.97 b.86.1.1 28374 2yzqA 282 71.93 1tc1A 220 72.37 c.61.1.1 34083 1k2xB 143 73.45 1ys7A 233 75.14 a.4.6.1,c.23.1.1 123961,123962 2et1A 201 75.39 b.82.1.2 132351 1yxaA 398 75.66 1vmkA 277 76.15 c.56.2.1 113680 1pk1B 89 76.78 a.60.1.2 118712 2jzdA 129 76.93 1s8nA 205 77.38 c.23.1.1 105374 1s98A 107 78.62 b.124.1.1 105377 3bofA 566 78.75 1y4jA 284 78.87 d.169.1.7 122620 1fitA 147 80.43 d.13.1.1 37499 1a62 130 80.69 1tx2A 297 81.34 c.1.21.1 107420 1dz3A 130 81.94 c.23.1.1 31105 2bgiA 272 83.07 1qyrA 252 83.11 c.66.1.24 104657 2ywuA 181 83.55 2ek5A 129 84.40 3c7jA 237 84.46 2b4wA 315 85.69 b.67.2.5 127866 1a62A 130 86.94 a.140.3.1,b.40.4.5 64708,64709 3by6A 126 88.49 1mb3A 124 89.79 c.23.1.1 78907 1a3cA 181 89.86 c.61.1.1 34095