# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g9oA	91	5.90e-12	b.36.1.1	60400
2ozfA	92	7.95e-12		
2he4A	90	8.42e-12		
1tp5A	119	8.60e-12	b.36.1.1	119305
2he2A	102	1.11e-11		
2v90A	96	1.51e-11		
2qg1A	92	1.77e-11		
2fneA	117	2.59e-11	b.36.1.1	133813
2ocsA	88	3.02e-11		
2opgA	98	3.17e-11		
2iwnA	97	3.19e-11		
2fe5A	94	3.50e-11	b.36.1.1	133323
2awxA	105	3.78e-11		
2i1nA	102	4.73e-11		
1n7eA	97	5.02e-11	b.36.1.1	91691
2f5yA	91	5.12e-11	b.36.1.1	133015
1qauA	112	5.98e-11	b.36.1.1	24779
2pa1A	87	7.75e-11		
2jilA	97	9.22e-11		
1nf3C	128	9.27e-11	b.36.1.1	85596
2q3gA	89	1.10e-10		
2jikA	101	1.12e-10		
2pktA	91	1.18e-10		
1qavA	90	1.20e-10	b.36.1.1	24777
2uzcA	88	1.34e-10		
1q3oA	109	1.64e-10	b.36.1.1	95700
2iwoA	120	2.09e-10		
2fcfA	103	2.10e-10	b.36.1.1	133267
2qkvA	96	2.18e-10		
2egoA	96	2.29e-10		
1fc6A	388	2.45e-10	b.36.1.3,c.14.1.2	64738,64739
1kwaA	88	2.64e-10	b.36.1.1	24772
1wf7A	103	2.67e-10	b.36.1.1	114577
2h2bA	107	3.64e-10		
1ihjA	98	3.66e-10	b.36.1.1	62382
2q9vA	90	3.97e-10		
2i04A	85	3.99e-10		
2eaqA	90	5.02e-10		
2vphA	100	5.51e-10		
2f0aA	98	5.99e-10	b.36.1.1	132661
1r6jA	82	6.70e-10	b.36.1.1	97151
2reyA	100	7.87e-10		
1x45A	98	8.61e-10	b.36.1.1	121679
2gzvA	114	1.36e-09		
3bpuA	88	2.22e-09		
2h3lA	103	2.97e-09	b.36.1.1	136046
1mfgA	95	4.82e-09	b.36.1.1	79043
2rczA	81	6.57e-09		
1y8tA	324	1.06e-05	b.36.1.4,b.47.1.1	122763,122764
2p3wA	112	1.20e-05		
1te0A	318	3.90e-05	b.36.1.4,b.47.1.1	112400,112401
1lcyA	325	4.19e-05	b.36.1.4,b.47.1.1	73834,73835
1j7xA	302	0.001116	c.14.1.2	66425
1k32A	1045	0.006700	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2i6vA	87	2.152		
2g8oA	264	6.611	d.117.1.1	134779
2adzA	178	6.771	b.55.1.1	126599
1bkpA	278	7.268	d.117.1.1	41029
2g8mA	264	7.422		
1w30A	201	7.795	c.61.1.1	114118
1ypvA	313	9.134		
1u9yA	284	10.81	c.61.1.2,c.61.1.2	119655,119656
1zn8A	180	11.07	c.61.1.1	125376
1f28A	297	14.12	d.117.1.1	59608
1l1qA	186	18.18	c.61.1.1	77653
1qqqA	264	21.04	d.117.1.1	40931
2igbA	179	21.95		
2zbvA	263	25.25		
2yzkA	178	26.19		
2p1zA	180	27.17		
1dkuA	317	28.06	c.61.1.2,c.61.1.2	34118,34119
2og9A	393	32.23		
1v9sA	208	32.71	c.61.1.1	119894
2jbhA	225	32.84		
2cw5A	255	35.49		
2q6kA	283	36.46		
1g2qA	187	37.37	c.61.1.1	65117
1y0bA	197	37.58	c.61.1.1	122476
1ev5A	264	38.62	d.117.1.1	40935
1a3c	181	39.86		
1lh0A	213	39.97	c.61.1.1	73896
2f4nA	273	40.09		
1vctA	205	41.35	a.7.12.1,d.286.1.1	119986,119987
2hcrA	326	42.12		
2pezA	179	42.35		
1zlqA	502	42.95	c.94.1.1	125253
1b5eA	246	45.59	d.117.1.1	41056
2aeeA	211	47.99	c.61.1.1	126620
1cjbA	231	48.45	c.61.1.1	34079
1h5rA	293	49.67	c.68.1.6	65623
1fi2A	201	51.10	b.82.1.2	59845
2j3tD	219	54.93		
3bpkA	206	60.98		
2et1A	201	62.08	b.82.1.2	132351
2gsmB	262	63.98	b.6.1.2,f.17.2.1	135590,135591
1p2fA	220	67.03	a.4.6.1,c.23.1.1	87720,87721
2o7iA	592	70.21		
3bhxA	709	70.69		
1oroA	213	71.44	c.61.1.1	34093
1f5nA	592	72.04	a.114.1.1,c.37.1.8	19077,32152
1a3cA	181	76.83	c.61.1.1	34095
2nwhA	317	77.44		
2g5cA	281	78.84	a.100.1.12,c.2.1.6	134646,134647
1fitA	147	82.10	d.13.1.1	37499
1l3kA	196	82.19	d.58.7.1,d.58.7.1	73539,73540
2i62A	265	82.68		
1mi8A	158	84.46	b.86.1.2	91279
1dmgA	225	85.11	c.22.1.1	31036
1zynA	202	85.48	c.47.1.2,c.47.1.2	125838,125839
2vesA	299	86.44		
2ef0A	301	88.21