# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g9oA 91 2.13e-11 b.36.1.1 60400 1tp5A 119 3.56e-11 b.36.1.1 119305 2he2A 102 3.83e-11 2ozfA 92 3.90e-11 2he4A 90 4.59e-11 2v90A 96 5.36e-11 2ocsA 88 1.09e-10 2awxA 105 1.39e-10 2fneA 117 1.39e-10 b.36.1.1 133813 2iwnA 97 1.43e-10 2opgA 98 1.53e-10 2qg1A 92 1.66e-10 2f5yA 91 2.21e-10 b.36.1.1 133015 2i1nA 102 2.24e-10 2fe5A 94 2.30e-10 b.36.1.1 133323 1qauA 112 2.75e-10 b.36.1.1 24779 2jilA 97 2.81e-10 2q3gA 89 3.28e-10 1nf3C 128 3.47e-10 b.36.1.1 85596 2pa1A 87 3.62e-10 1n7eA 97 3.68e-10 b.36.1.1 91691 2pktA 91 3.78e-10 2jikA 101 3.99e-10 2uzcA 88 4.32e-10 1q3oA 109 4.81e-10 b.36.1.1 95700 2iwoA 120 6.69e-10 2egoA 96 7.02e-10 1qavA 90 7.04e-10 b.36.1.1 24777 2qkvA 96 7.06e-10 1wf7A 103 9.11e-10 b.36.1.1 114577 2fcfA 103 9.94e-10 b.36.1.1 133267 2h2bA 107 1.03e-09 2q9vA 90 1.15e-09 1kwaA 88 1.18e-09 b.36.1.1 24772 1ihjA 98 1.22e-09 b.36.1.1 62382 2vphA 100 1.59e-09 2f0aA 98 1.66e-09 b.36.1.1 132661 1fc6A 388 1.71e-09 b.36.1.3,c.14.1.2 64738,64739 2i04A 85 1.81e-09 2reyA 100 2.12e-09 1r6jA 82 2.55e-09 b.36.1.1 97151 2eaqA 90 2.89e-09 2gzvA 114 4.91e-09 1x45A 98 6.41e-09 b.36.1.1 121679 3bpuA 88 7.83e-09 2h3lA 103 8.20e-09 b.36.1.1 136046 1mfgA 95 1.15e-08 b.36.1.1 79043 2rczA 81 1.88e-08 1y8tA 324 1.51e-05 b.36.1.4,b.47.1.1 122763,122764 2p3wA 112 2.16e-05 1te0A 318 7.06e-05 b.36.1.4,b.47.1.1 112400,112401 1lcyA 325 8.78e-05 b.36.1.4,b.47.1.1 73834,73835 1j7xA 302 0.002605 c.14.1.2 66425 1k32A 1045 0.01608 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2i6vA 87 0.9853 2g8oA 264 7.767 d.117.1.1 134779 2g8mA 264 8.448 1w30A 201 9.709 c.61.1.1 114118 1y0bA 197 10.44 c.61.1.1 122476 1zn8A 180 10.51 c.61.1.1 125376 1ypvA 313 11.10 1bkpA 278 12.18 d.117.1.1 41029 2aeeA 211 12.50 c.61.1.1 126620 1vchA 175 13.88 c.61.1.1 119980 2adzA 178 14.73 b.55.1.1 126599 2p1zA 180 17.96 2igbA 179 18.96 1l1qA 186 21.19 c.61.1.1 77653 1u9yA 284 22.34 c.61.1.2,c.61.1.2 119655,119656 1qqqA 264 23.34 d.117.1.1 40931 2zbvA 263 24.31 2yzkA 178 25.89 2jbhA 225 27.00 1g2qA 187 29.03 c.61.1.1 65117 1mi8A 158 29.39 b.86.1.2 91279 1a3c 181 30.95 2z1cA 75 31.89 1f28A 297 32.29 d.117.1.1 59608 2cw5A 255 33.73 2j3tD 219 34.97 2q6kA 283 35.50 2nwhA 317 37.72 1cjbA 231 43.06 c.61.1.1 34079 1i0lA 221 45.72 c.61.1.1 71096 2hcrA 326 46.19 1h5rA 293 46.29 c.68.1.6 65623 1ev5A 264 50.05 d.117.1.1 40935 1l3kA 196 51.26 d.58.7.1,d.58.7.1 73539,73540 1oj7A 408 51.40 e.22.1.2 103971 1a3cA 181 53.30 c.61.1.1 34095 2f4nA 273 55.36 1dkuA 317 55.72 c.61.1.2,c.61.1.2 34118,34119 1vctA 205 58.70 a.7.12.1,d.286.1.1 119986,119987 1fsgA 233 59.57 c.61.1.1 34029 1h9oA 112 59.75 d.93.1.1 60837 1lh0A 213 61.79 c.61.1.1 73896 2gebA 185 67.82 1rqpA 299 78.58 b.141.1.1,c.132.1.1 97754,97755 1zlqA 502 78.73 c.94.1.1 125253 3bs5A 106 78.82 2og9A 393 82.19 1vmkA 277 84.24 c.56.2.1 113680 3bpkA 206 84.44 2gsmB 262 88.08 b.6.1.2,f.17.2.1 135590,135591 2ef0A 301 88.26