# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g9oA	91	7.71e-12	b.36.1.1	60400
1tp5A	119	9.88e-12	b.36.1.1	119305
2he4A	90	1.22e-11		
2he2A	102	1.22e-11		
2ozfA	92	1.23e-11		
2v90A	96	2.27e-11		
2awxA	105	3.74e-11		
2qg1A	92	3.76e-11		
2ocsA	88	4.03e-11		
2fneA	117	4.77e-11	b.36.1.1	133813
2iwnA	97	5.02e-11		
2opgA	98	5.09e-11		
2fe5A	94	5.48e-11	b.36.1.1	133323
2i1nA	102	6.87e-11		
1qauA	112	7.02e-11	b.36.1.1	24779
2f5yA	91	7.53e-11	b.36.1.1	133015
2jilA	97	1.01e-10		
1n7eA	97	1.04e-10	b.36.1.1	91691
1nf3C	128	1.25e-10	b.36.1.1	85596
2jikA	101	1.27e-10		
2pktA	91	1.58e-10		
2q3gA	89	1.62e-10		
2pa1A	87	1.66e-10		
1q3oA	109	1.83e-10	b.36.1.1	95700
2uzcA	88	1.99e-10		
2egoA	96	2.12e-10		
2qkvA	96	2.28e-10		
1qavA	90	2.34e-10	b.36.1.1	24777
2iwoA	120	2.57e-10		
1kwaA	88	3.46e-10	b.36.1.1	24772
2fcfA	103	3.55e-10	b.36.1.1	133267
2h2bA	107	4.03e-10		
1ihjA	98	4.22e-10	b.36.1.1	62382
2q9vA	90	4.55e-10		
1wf7A	103	4.82e-10	b.36.1.1	114577
2f0aA	98	5.67e-10	b.36.1.1	132661
2vphA	100	6.95e-10		
2reyA	100	7.37e-10		
1fc6A	388	7.66e-10	b.36.1.3,c.14.1.2	64738,64739
2i04A	85	8.66e-10		
1r6jA	82	9.42e-10	b.36.1.1	97151
2eaqA	90	1.35e-09		
1x45A	98	1.43e-09	b.36.1.1	121679
2gzvA	114	2.55e-09		
2h3lA	103	3.16e-09	b.36.1.1	136046
3bpuA	88	3.25e-09		
1mfgA	95	4.21e-09	b.36.1.1	79043
2rczA	81	1.11e-08		
1y8tA	324	1.36e-05	b.36.1.4,b.47.1.1	122763,122764
2p3wA	112	1.47e-05		
1te0A	318	5.39e-05	b.36.1.4,b.47.1.1	112400,112401
1lcyA	325	8.41e-05	b.36.1.4,b.47.1.1	73834,73835
1j7xA	302	0.002074	c.14.1.2	66425
1k32A	1045	0.02254	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2i6vA	87	2.439		
1w30A	201	6.827	c.61.1.1	114118
2g8oA	264	9.462	d.117.1.1	134779
2g8mA	264	10.21		
2adzA	178	10.53	b.55.1.1	126599
1zn8A	180	11.82	c.61.1.1	125376
1ypvA	313	12.28		
2igbA	179	13.87		
1bkpA	278	15.97	d.117.1.1	41029
1y0bA	197	15.99	c.61.1.1	122476
1g2qA	187	16.88	c.61.1.1	65117
1vctA	205	17.39	a.7.12.1,d.286.1.1	119986,119987
2aeeA	211	19.58	c.61.1.1	126620
1qqqA	264	20.93	d.117.1.1	40931
2p1zA	180	22.27		
1u9yA	284	23.41	c.61.1.2,c.61.1.2	119655,119656
2jbhA	225	24.16		
1l1qA	186	24.60	c.61.1.1	77653
1f28A	297	25.00	d.117.1.1	59608
1lh0A	213	29.54	c.61.1.1	73896
1vchA	175	30.00	c.61.1.1	119980
2yzkA	178	31.30		
1a3c	181	32.94		
2og9A	393	33.53		
1mi8A	158	36.64	b.86.1.2	91279
2j3tD	219	42.31		
1cjbA	231	42.84	c.61.1.1	34079
1dkuA	317	43.28	c.61.1.2,c.61.1.2	34118,34119
1h5rA	293	43.84	c.68.1.6	65623
1ev5A	264	44.85	d.117.1.1	40935
2hcrA	326	48.16		
2cw5A	255	51.82		
1zlqA	502	52.23	c.94.1.1	125253
2zbvA	263	60.52		
1vmkA	277	60.76	c.56.2.1	113680
1f5nA	592	61.35	a.114.1.1,c.37.1.8	19077,32152
2gebA	185	61.73		
1a3cA	181	66.44	c.61.1.1	34095
2q6kA	283	67.56		
1h9oA	112	67.57	d.93.1.1	60837
1oj7A	408	71.24	e.22.1.2	103971
1i0lA	221	71.94	c.61.1.1	71096
1oroA	213	74.26	c.61.1.1	34093
1fsgA	233	77.93	c.61.1.1	34029
3bs5A	106	79.37		
1l3kA	196	79.38	d.58.7.1,d.58.7.1	73539,73540
1b5eA	246	80.92	d.117.1.1	41056
1at0	145	80.96		
2vesA	299	81.74		
1fi2A	201	82.75	b.82.1.2	59845
1wd5A	208	82.83	c.61.1.1	114524
1ua4A	455	82.89	c.72.1.3	99128
2gm5A	139	83.52		
1dmgA	225	85.27	c.22.1.1	31036
1at0A	145	86.25	b.86.1.1	28374
1t6t1	118	88.94		
3bpkA	206	89.25