# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g9oA	91	1.62e-13	b.36.1.1	60400
2he2A	102	2.00e-13		
2he4A	90	2.41e-13		
1tp5A	119	2.45e-13	b.36.1.1	119305
2ozfA	92	2.63e-13		
2v90A	96	6.22e-13		
2qg1A	92	7.87e-13		
2awxA	105	9.85e-13		
2ocsA	88	1.03e-12		
2opgA	98	1.18e-12		
2fneA	117	1.22e-12	b.36.1.1	133813
1qauA	112	1.39e-12	b.36.1.1	24779
2fe5A	94	1.39e-12	b.36.1.1	133323
2iwnA	97	1.41e-12		
1n7eA	97	1.94e-12	b.36.1.1	91691
2f5yA	91	2.22e-12	b.36.1.1	133015
2jilA	97	2.51e-12		
2i1nA	102	2.73e-12		
1nf3C	128	3.48e-12	b.36.1.1	85596
2pa1A	87	3.81e-12		
2jikA	101	4.94e-12		
2pktA	91	6.08e-12		
1qavA	90	6.17e-12	b.36.1.1	24777
2qkvA	96	6.23e-12		
2q3gA	89	6.51e-12		
1wf7A	103	6.74e-12	b.36.1.1	114577
2iwoA	120	7.17e-12		
2uzcA	88	7.67e-12		
2egoA	96	7.69e-12		
1q3oA	109	1.10e-11	b.36.1.1	95700
2fcfA	103	1.11e-11	b.36.1.1	133267
2q9vA	90	1.13e-11		
1kwaA	88	1.13e-11	b.36.1.1	24772
2eaqA	90	1.57e-11		
1fc6A	388	1.61e-11	b.36.1.3,c.14.1.2	64738,64739
1ihjA	98	1.63e-11	b.36.1.1	62382
2i04A	85	2.11e-11		
2f0aA	98	2.13e-11	b.36.1.1	132661
2h2bA	107	2.81e-11		
2reyA	100	2.97e-11		
2vphA	100	2.98e-11		
1x45A	98	3.44e-11	b.36.1.1	121679
1r6jA	82	3.54e-11	b.36.1.1	97151
2gzvA	114	7.86e-11		
3bpuA	88	1.79e-10		
2rczA	81	1.80e-10		
2h3lA	103	2.14e-10	b.36.1.1	136046
1mfgA	95	3.87e-10	b.36.1.1	79043
1y8tA	324	3.50e-06	b.36.1.4,b.47.1.1	122763,122764
2p3wA	112	3.96e-06		
1te0A	318	1.14e-05	b.36.1.4,b.47.1.1	112400,112401
1lcyA	325	1.48e-05	b.36.1.4,b.47.1.1	73834,73835
1j7xA	302	0.000427	c.14.1.2	66425
1k32A	1045	0.01135	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2adzA	178	1.503	b.55.1.1	126599
2i6vA	87	2.491		
1w30A	201	7.933	c.61.1.1	114118
2g8oA	264	10.57	d.117.1.1	134779
1bkpA	278	10.79	d.117.1.1	41029
2g8mA	264	12.98		
1f28A	297	14.64	d.117.1.1	59608
1qqqA	264	17.95	d.117.1.1	40931
2og9A	393	19.00		
1ev5A	264	24.51	d.117.1.1	40935
1l3kA	196	25.18	d.58.7.1,d.58.7.1	73539,73540
1zlqA	502	26.68	c.94.1.1	125253
1vctA	205	27.35	a.7.12.1,d.286.1.1	119986,119987
2igbA	179	30.87		
2cw5A	255	34.37		
1u9yA	284	36.48	c.61.1.2,c.61.1.2	119655,119656
3bpkA	206	37.07		
2q6kA	283	39.46		
2zbvA	263	42.45		
1l1qA	186	42.78	c.61.1.1	77653
1ypvA	313	44.71		
2jbhA	225	45.66		
2p1zA	180	48.08		
1a3c	181	50.52		
2d5wA	603	50.92		
2f4nA	273	51.97		
2nwhA	317	53.46		
2pezA	179	53.93		
2bmfA	451	57.29	c.37.1.14,c.37.1.14	128791,128792
2vesA	299	60.26		
1b5eA	246	64.43	d.117.1.1	41056
1g2qA	187	66.75	c.61.1.1	65117
1p2fA	220	67.16	a.4.6.1,c.23.1.1	87720,87721
4dfrA	159	68.63	c.71.1.1	34822
1mi8A	158	68.69	b.86.1.2	91279
2j3tD	219	72.19		
1ra9	159	75.39		
1lh0A	213	75.47	c.61.1.1	73896
1dmgA	225	76.60	c.22.1.1	31036
2h5uA	499	77.14		
2i62A	265	78.26		
2gsmB	262	80.07	b.6.1.2,f.17.2.1	135590,135591
2pbtA	134	83.81		
1j8uA	325	87.15	d.178.1.1	71611
2etjA	250	89.42	c.55.3.1	132360
1fitA	147	89.74	d.13.1.1	37499