# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g9oA	91	4.94e-12	b.36.1.1	60400
2he2A	102	7.45e-12		
1tp5A	119	8.91e-12	b.36.1.1	119305
2ozfA	92	9.66e-12		
2he4A	90	1.02e-11		
2v90A	96	1.74e-11		
2fneA	117	2.52e-11	b.36.1.1	133813
2ocsA	88	2.57e-11		
2qg1A	92	2.71e-11		
2awxA	105	3.01e-11		
2fe5A	94	3.02e-11	b.36.1.1	133323
2i1nA	102	3.23e-11		
2opgA	98	3.30e-11		
2iwnA	97	3.75e-11		
1n7eA	97	4.01e-11	b.36.1.1	91691
1qauA	112	4.62e-11	b.36.1.1	24779
2f5yA	91	4.99e-11	b.36.1.1	133015
2jilA	97	5.57e-11		
2jikA	101	6.64e-11		
1nf3C	128	7.57e-11	b.36.1.1	85596
2pa1A	87	7.98e-11		
2q3gA	89	1.10e-10		
1qavA	90	1.19e-10	b.36.1.1	24777
2uzcA	88	1.41e-10		
2pktA	91	1.44e-10		
2iwoA	120	1.55e-10		
1q3oA	109	1.67e-10	b.36.1.1	95700
1kwaA	88	1.72e-10	b.36.1.1	24772
1fc6A	388	1.76e-10	b.36.1.3,c.14.1.2	64738,64739
2qkvA	96	1.80e-10		
2q9vA	90	1.84e-10		
2fcfA	103	1.91e-10	b.36.1.1	133267
1wf7A	103	2.00e-10	b.36.1.1	114577
2egoA	96	2.31e-10		
1ihjA	98	2.38e-10	b.36.1.1	62382
2i04A	85	2.60e-10		
2h2bA	107	2.81e-10		
2f0aA	98	3.32e-10	b.36.1.1	132661
1r6jA	82	3.89e-10	b.36.1.1	97151
2reyA	100	4.61e-10		
1x45A	98	5.09e-10	b.36.1.1	121679
2eaqA	90	5.99e-10		
2vphA	100	6.88e-10		
2gzvA	114	9.83e-10		
2rczA	81	1.49e-09		
2h3lA	103	1.64e-09	b.36.1.1	136046
1mfgA	95	2.01e-09	b.36.1.1	79043
3bpuA	88	2.90e-09		
1y8tA	324	7.69e-06	b.36.1.4,b.47.1.1	122763,122764
2p3wA	112	1.06e-05		
1lcyA	325	2.89e-05	b.36.1.4,b.47.1.1	73834,73835
1te0A	318	3.58e-05	b.36.1.4,b.47.1.1	112400,112401
1j7xA	302	0.001996	c.14.1.2	66425
1k32A	1045	0.009735	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2i6vA	87	2.597		
2g8oA	264	8.041	d.117.1.1	134779
1f28A	297	8.627	d.117.1.1	59608
1w30A	201	9.171	c.61.1.1	114118
2g8mA	264	9.288		
1bkpA	278	10.76	d.117.1.1	41029
1g2qA	187	13.83	c.61.1.1	65117
1qqqA	264	14.72	d.117.1.1	40931
2adzA	178	16.17	b.55.1.1	126599
1vctA	205	17.13	a.7.12.1,d.286.1.1	119986,119987
1u9yA	284	18.28	c.61.1.2,c.61.1.2	119655,119656
2igbA	179	18.89		
1ev5A	264	20.00	d.117.1.1	40935
2jbhA	225	20.48		
1ypvA	313	21.98		
2q6kA	283	23.77		
2p1zA	180	29.18		
2j3tD	219	29.70		
2zbvA	263	30.48		
2z1cA	75	31.45		
2cw5A	255	35.18		
1v9sA	208	38.07	c.61.1.1	119894
2og9A	393	38.71		
1zn8A	180	41.14	c.61.1.1	125376
1a3c	181	43.13		
1wd5A	208	43.84	c.61.1.1	114524
2yzkA	178	47.71		
1p2fA	220	48.05	a.4.6.1,c.23.1.1	87720,87721
1mi8A	158	48.24	b.86.1.2	91279
1cjbA	231	54.58	c.61.1.1	34079
2hcrA	326	55.15		
2nwhA	317	56.93		
1fi2A	201	57.97	b.82.1.2	59845
1vmkA	277	58.04	c.56.2.1	113680
2f4nA	273	58.57		
2gsmB	262	59.60	b.6.1.2,f.17.2.1	135590,135591
2i62A	265	60.72		
1l3kA	196	64.49	d.58.7.1,d.58.7.1	73539,73540
1fitA	147	65.64	d.13.1.1	37499
1dkuA	317	66.30	c.61.1.2,c.61.1.2	34118,34119
1f5nA	592	68.16	a.114.1.1,c.37.1.8	19077,32152
3bpkA	206	68.32		
1s98A	107	70.14	b.124.1.1	105377
3bs5A	106	70.54		
2et1A	201	71.59	b.82.1.2	132351
1lh0A	213	73.66	c.61.1.1	73896
2burB	241	73.99	b.3.6.1	129228
2vesA	299	74.84		
1oroA	213	75.47	c.61.1.1	34093
2o38A	120	80.43		
1ra9	159	80.89		
1t6t1	118	83.69		
2yzqA	282	85.62		
2gm5A	139	86.32		
1l1qA	186	87.88	c.61.1.1	77653
1a3cA	181	88.00	c.61.1.1	34095
1z7xW	461	89.23	c.10.1.1	124675
1dmgA	225	89.99	c.22.1.1	31036