# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g9oA 91 3.77e-14 b.36.1.1 60400 2ozfA 92 5.25e-14 2he2A 102 6.53e-14 2v90A 96 9.56e-14 2he4A 90 1.14e-13 1tp5A 119 2.01e-13 b.36.1.1 119305 2qg1A 92 2.10e-13 2iwnA 97 3.21e-13 2awxA 105 3.48e-13 2fneA 117 3.51e-13 b.36.1.1 133813 2jilA 97 3.91e-13 2i1nA 102 4.05e-13 1qavA 90 4.83e-13 b.36.1.1 24777 1n7eA 97 5.64e-13 b.36.1.1 91691 2jikA 101 6.55e-13 2opgA 98 6.82e-13 2ocsA 88 7.21e-13 1nf3C 128 7.76e-13 b.36.1.1 85596 2fe5A 94 7.93e-13 b.36.1.1 133323 2pa1A 87 1.06e-12 2f5yA 91 1.49e-12 b.36.1.1 133015 2uzcA 88 1.50e-12 2q3gA 89 1.54e-12 1wf7A 103 1.92e-12 b.36.1.1 114577 1q3oA 109 1.99e-12 b.36.1.1 95700 1qauA 112 2.07e-12 b.36.1.1 24779 2pktA 91 2.14e-12 2h2bA 107 2.33e-12 2qkvA 96 2.79e-12 1x45A 98 2.82e-12 b.36.1.1 121679 1ihjA 98 2.87e-12 b.36.1.1 62382 2iwoA 120 3.07e-12 2egoA 96 3.68e-12 2q9vA 90 3.79e-12 2fcfA 103 4.73e-12 b.36.1.1 133267 2reyA 100 5.69e-12 1kwaA 88 6.00e-12 b.36.1.1 24772 2f0aA 98 6.52e-12 b.36.1.1 132661 2i04A 85 7.41e-12 2vphA 100 1.15e-11 2gzvA 114 1.29e-11 1fc6A 388 2.18e-11 b.36.1.3,c.14.1.2 64738,64739 1r6jA 82 4.86e-11 b.36.1.1 97151 2h3lA 103 5.39e-11 b.36.1.1 136046 3bpuA 88 8.03e-11 1mfgA 95 1.14e-10 b.36.1.1 79043 2eaqA 90 1.26e-10 2rczA 81 1.86e-08 2p3wA 112 6.82e-06 1lcyA 325 2.54e-05 b.36.1.4,b.47.1.1 73834,73835 1y8tA 324 4.51e-05 b.36.1.4,b.47.1.1 122763,122764 1te0A 318 4.75e-05 b.36.1.4,b.47.1.1 112400,112401 1j7xA 302 0.002427 c.14.1.2 66425 1k32A 1045 0.06489 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2i6vA 87 0.5189 1w30A 201 4.487 c.61.1.1 114118 3bpkA 206 7.786 2g8mA 264 12.56 1bkpA 278 14.46 d.117.1.1 41029 2qckA 167 14.90 2g8oA 264 16.52 d.117.1.1 134779 2igbA 179 17.80 1yoaA 159 21.29 b.45.1.2 123775 1qqqA 264 21.34 d.117.1.1 40931 1ypvA 313 22.21 2o07A 304 25.23 c.66.1.17 138862 2r0xA 158 25.61 1f28A 297 25.64 d.117.1.1 59608 1dmgA 225 27.76 c.22.1.1 31036 1xm7A 195 30.61 d.159.1.8 115473 1ev5A 264 32.87 d.117.1.1 40935 1rqpA 299 34.35 b.141.1.1,c.132.1.1 97754,97755 1f5nA 592 37.72 a.114.1.1,c.37.1.8 19077,32152 2ax4A 198 37.90 1i0rA 169 38.62 b.45.1.2 61489 1iy8A 267 43.60 c.2.1.2 83774 1up7A 417 44.20 c.2.1.5,d.162.1.2 113374,113375 1rz1A 161 44.56 b.45.1.2 98124 2zihA 347 45.11 2zbvA 263 48.96 1vctA 205 50.61 a.7.12.1,d.286.1.1 119986,119987 1vjnA 220 51.76 d.157.1.4 100825 2ecuA 149 52.27 1z7xW 461 53.17 c.10.1.1 124675 2cw5A 255 53.47 2ebn 289 56.31 2r6vA 191 63.45 2cl2A 298 63.55 2vefA 314 65.12 2j73A 103 65.80 3bs5A 106 65.89 2d5mA 190 66.44 2og9A 393 67.33 1zk4A 251 68.96 c.2.1.2 125176 2acfA 182 69.43 c.50.1.2 126547 1tzfA 259 69.82 c.68.1.13 107476 1kk1A 410 70.84 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1u14A 172 71.80 c.51.4.3 107579 1xv5A 401 72.22 1zynA 202 73.37 c.47.1.2,c.47.1.2 125838,125839 2ahoA 414 74.25 b.43.3.1,b.44.1.1,c.37.1.8 126767,126768,126769 1oroA 213 75.40 c.61.1.1 34093 2q6kA 283 75.82 1wuuA 399 79.79 d.14.1.5,d.58.26.7 114900,114901 2pezA 179 80.20 1kgsA 225 83.26 a.4.6.1,c.23.1.1 68596,68597 1o4uA 285 84.22 c.1.17.1,d.41.2.1 86624,86625 2q4gW 461 87.32 c.10.1.1 139849