# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g9oA 91 1.30e-16 b.36.1.1 60400 2ozfA 92 3.00e-16 2qg1A 92 1.09e-15 2v90A 96 3.21e-15 2he4A 90 3.52e-15 2f5yA 91 4.86e-15 b.36.1.1 133015 2ocsA 88 5.95e-15 2uzcA 88 8.02e-15 2opgA 98 9.79e-15 2jikA 101 1.13e-14 2iwnA 97 1.19e-14 2fe5A 94 1.47e-14 b.36.1.1 133323 2jilA 97 1.67e-14 2egoA 96 1.68e-14 2he2A 102 1.74e-14 2qkvA 96 1.88e-14 1qavA 90 1.88e-14 b.36.1.1 24777 2fcfA 103 2.13e-14 b.36.1.1 133267 2gzvA 114 2.29e-14 2q3gA 89 2.70e-14 1ihjA 98 3.09e-14 b.36.1.1 62382 2fneA 117 3.10e-14 b.36.1.1 133813 2pktA 91 3.56e-14 2i1nA 102 3.82e-14 1tp5A 119 4.09e-14 b.36.1.1 119305 1qauA 112 4.36e-14 b.36.1.1 24779 2reyA 100 5.15e-14 2awxA 105 5.32e-14 1x45A 98 6.79e-14 b.36.1.1 121679 1q3oA 109 8.99e-14 b.36.1.1 95700 1n7eA 97 1.32e-13 b.36.1.1 91691 2pa1A 87 2.40e-13 2h2bA 107 2.72e-13 1kwaA 88 3.01e-13 b.36.1.1 24772 2h3lA 103 3.04e-13 b.36.1.1 136046 2iwoA 120 3.81e-13 3bpuA 88 4.32e-13 2vphA 100 5.44e-13 1r6jA 82 5.70e-13 b.36.1.1 97151 2i04A 85 6.60e-13 1mfgA 95 7.86e-13 b.36.1.1 79043 1wf7A 103 1.06e-12 b.36.1.1 114577 2q9vA 90 1.23e-12 2f0aA 98 4.08e-12 b.36.1.1 132661 1nf3C 128 8.42e-12 b.36.1.1 85596 2eaqA 90 3.01e-11 1fc6A 388 4.97e-09 b.36.1.3,c.14.1.2 64738,64739 2rczA 81 6.36e-09 1y8tA 324 1.09e-06 b.36.1.4,b.47.1.1 122763,122764 2p3wA 112 2.65e-06 1lcyA 325 8.08e-06 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 4.31e-05 b.36.1.4,b.47.1.1 112400,112401 2i6vA 87 0.000674 1k32A 1045 0.02699 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 3bdiA 207 5.075 2dstA 131 5.774 2yysA 286 9.794 2rexB 197 10.54 1cjwA 166 12.05 d.108.1.1 40818 1x3mA 415 12.17 c.55.1.2,c.55.1.2 121664,121665 2ffqA 171 13.29 1pne 140 13.53 2ap1A 327 14.69 c.55.1.10,c.55.1.10 127108,127109 2j3tD 219 15.47 1lh0A 213 16.73 c.61.1.1 73896 1mtzA 293 19.86 c.69.1.7 79467 2qdfA 335 20.48 1l3kA 196 20.52 d.58.7.1,d.58.7.1 73539,73540 1j1iA 296 21.64 c.69.1.10 83977 1luzA 88 21.93 b.40.4.5 74271 1l0cA 207 23.45 d.108.1.1 73393 2reeA 224 23.90 1a62 130 24.11 1wv8A 73 24.65 d.304.1.1 121326 1z2aA 168 24.73 c.37.1.8 124374 2f9lA 199 26.41 c.37.1.8 133166 2ei9A 240 26.46 2cf5A 357 26.81 1widA 130 26.95 b.142.1.2 114667 2gs8A 317 27.34 1i4uA 181 27.58 b.60.1.1 61732 2qruA 274 30.57 1a62A 130 31.11 a.140.3.1,b.40.4.5 64708,64709 2aefA 234 34.07 1fxlA 167 37.19 d.58.7.1,d.58.7.1 39183,39184 2v8fA 140 40.42 1vhxA 150 40.47 c.55.3.8 100712 2h7aA 110 40.99 1dmgA 225 41.35 c.22.1.1 31036 3bp1A 290 41.65 2e1zA 415 42.08 1vj0A 380 42.81 b.35.1.2,c.2.1.1 100786,100787 1azwA 313 43.04 c.69.1.7 34658 1u04A 771 43.20 b.34.14.1,c.55.3.10 107539,107540 1r61A 207 43.86 c.8.8.1 97138 1vh0A 161 44.10 c.116.1.3 100626 1ek0A 170 45.45 c.37.1.8 32076 2pavP 139 48.74 1yzqA 170 49.12 c.37.1.8 124286 1ygsA 234 51.13 b.26.1.1 23907 1xqwA 293 51.16 2cdqA 510 55.55 c.73.1.3,d.58.18.10,d.58.18.10 130290,130291,130292 1z0jA 170 55.60 c.37.1.8 124319 1m5q1 130 55.78 2a67A 167 56.33 2dxqA 150 59.57 3tglA 269 60.12 c.69.1.17 34733 2bw3A 534 61.14 a.270.1.1,c.55.3.12 129317,129318 1viuA 203 62.59 d.113.1.1 100771 1um0A 365 65.29 d.258.1.1 107942 2ew1A 201 66.04 c.37.1.8 132446 1y37A 304 67.65 1tibA 269 67.78 c.69.1.17 34738 2oaaA 249 68.91 1v47A 349 69.37 b.122.1.3,c.26.1.5 100292,100293 1i2mA 216 70.26 c.37.1.8 61568 1n3yA 198 71.35 c.62.1.1 79976 2e3jA 356 71.60 1x3sA 195 71.79 c.37.1.8 121670 2ehjA 208 72.86 2g6bA 180 73.54 c.37.1.8 134701 1z06A 189 74.22 c.37.1.8 124301 1yioA 208 74.56 a.4.6.2,c.23.1.1 123326,123327 1r2qA 170 75.69 c.37.1.8 96874 1pneA 139 75.97 d.110.1.1 40866 1tqxA 227 77.19 c.1.2.2 112614 1bn7A 294 77.50 c.69.1.8 34677 2gf9A 189 77.96 2v8pA 271 78.29 2bcgY 206 78.39 c.37.1.8 128285 2c5qA 240 78.56 2i62A 265 78.80 1cq3A 233 79.45 b.27.1.1 23923 1yqdA 366 79.70 2pbdP 139 79.72 1uufA 369 79.86 b.35.1.2,c.2.1.1 100006,100007 2o38A 120 82.61 2bhoA 130 83.09 2q88A 257 84.85 1j1tA 233 85.62 b.29.1.18 90771 1nu5A 370 86.66 c.1.11.2,d.54.1.1 92183,92184 1va4A 279 87.22 c.69.1.12 108458 1sjyA 159 87.62 d.113.1.1 98900 1y9kA 157 87.67 d.108.1.1 122779 2ocgA 254 87.71 4ubpB 126 87.72 b.85.3.1 28345 2fukA 220 88.14 1x6oA 174 88.42 b.34.5.2,b.40.4.5 109493,109494 1q0rA 298 88.54 c.69.1.28 95508 1fjgK 129 89.88 c.55.4.1 33733