# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g9oA 91 4.49e-14 b.36.1.1 60400 2ozfA 92 4.73e-14 1tp5A 119 5.33e-14 b.36.1.1 119305 2he2A 102 5.92e-14 2v90A 96 6.84e-14 1be9A 119 7.11e-14 b.36.1.1 24774 2he4A 90 8.23e-14 2fneA 117 2.12e-13 b.36.1.1 133813 2qg1A 92 2.21e-13 2ocsA 88 2.54e-13 2iwnA 97 2.78e-13 2jilA 97 3.18e-13 1n7eA 97 3.23e-13 b.36.1.1 91691 2i1nA 102 3.26e-13 2awxA 105 3.31e-13 2jikA 101 3.61e-13 2opgA 98 3.92e-13 2fe5A 94 4.94e-13 b.36.1.1 133323 1qavA 90 6.08e-13 b.36.1.1 24777 2f5yA 91 6.85e-13 b.36.1.1 133015 2pktA 91 7.22e-13 2q3gA 89 1.10e-12 1qauA 112 1.31e-12 b.36.1.1 24779 1kwaA 88 1.48e-12 b.36.1.1 24772 2iwoA 120 1.61e-12 1q3oA 109 1.73e-12 b.36.1.1 95700 2gzvA 114 2.19e-12 1wf7A 103 2.30e-12 b.36.1.1 114577 2qkvA 96 2.91e-12 2pa1A 87 3.02e-12 1v5lA 103 3.22e-12 b.36.1.1 108378 1ihjA 98 3.88e-12 b.36.1.1 62382 2uzcA 88 4.19e-12 2fcfA 103 4.21e-12 b.36.1.1 133267 2h2bA 107 4.95e-12 2f0aA 98 5.05e-12 b.36.1.1 132661 1l6oA 95 6.16e-12 b.36.1.1 84534 2q9vA 90 6.18e-12 2i04A 85 6.52e-12 2egoA 96 8.53e-12 1x45A 98 1.00e-11 b.36.1.1 121679 2vphA 100 1.14e-11 1r6jA 82 1.27e-11 b.36.1.1 97151 3bpuA 88 2.03e-11 2reyA 100 2.10e-11 2h3lA 103 4.09e-11 b.36.1.1 136046 1fc6A 388 4.63e-11 b.36.1.3,c.14.1.2 64738,64739 1mfgA 95 1.18e-10 b.36.1.1 79043 1nf3C 128 1.37e-10 b.36.1.1 85596 2rczA 81 2.48e-10 2eaqA 90 6.38e-10 1y8tA 324 8.71e-06 b.36.1.4,b.47.1.1 122763,122764 2p3wA 112 1.40e-05 1lcyA 325 0.000102 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 0.000129 b.36.1.4,b.47.1.1 112400,112401 1sotA 320 0.000905 b.36.1.4,b.47.1.1 105852,105853 2adzA 178 0.007734 b.55.1.1 126599 1k32A 1045 0.05813 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2i6vA 87 0.2035 2g8mA 264 2.268 2p1zA 180 2.409 1hvyA 288 2.815 d.117.1.1 41049 1vchA 175 2.979 c.61.1.1 119980 1qqqA 264 3.104 d.117.1.1 40931 1bkpA 278 3.580 d.117.1.1 41029 2g8oA 264 4.065 d.117.1.1 134779 1ypvA 313 4.426 1j7xA 302 4.833 c.14.1.2 66425 1evfA 264 5.160 d.117.1.1 40932 1ha1 184 5.763 2rgqA 144 7.236 2d5wA 603 7.961 1l3kA 196 8.693 d.58.7.1,d.58.7.1 73539,73540 2q6kA 283 9.245 1f28A 297 9.896 d.117.1.1 59608 1g2qA 187 11.38 c.61.1.1 65117 2yzkA 178 13.31 1dkuA 317 15.69 c.61.1.2,c.61.1.2 34118,34119 1ev5A 264 15.86 d.117.1.1 40935 1l5jA 865 16.15 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 2hcrA 326 17.37 1rqpA 299 17.38 b.141.1.1,c.132.1.1 97754,97755 1l1qA 186 22.52 c.61.1.1 77653 1c9oA 66 23.04 b.40.4.5 25325 2zbvA 263 26.11 2btuA 346 28.62 2ps1A 226 31.72 1b5eA 246 32.65 d.117.1.1 41056 2aeeA 211 32.95 c.61.1.1 126620 1bd3A 243 32.97 c.61.1.1 34098 2adcA 229 35.17 d.58.7.1,d.58.7.1 126582,126583 1qm9A 198 35.84 d.58.7.1,d.58.7.1 39207,39208 2cw5A 255 38.74 3bs5A 106 40.16 2f4nA 273 43.72 1u9yA 284 47.91 c.61.1.2,c.61.1.2 119655,119656 2j3tD 219 48.62 2jfrA 234 48.68 1v9sA 208 52.37 c.61.1.1 119894 2yyhA 139 54.82 1krhA 338 56.05 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1t71A 281 56.08 d.159.1.9 112283 2dy0A 190 59.84 2gm5A 139 61.64 2ax4A 198 66.04 1w30A 201 66.30 c.61.1.1 114118 1xv5A 401 68.15 1uc2A 481 68.77 d.261.1.1 99161 1fxlA 167 72.99 d.58.7.1,d.58.7.1 39183,39184 2blnA 305 75.83 b.46.1.1,c.65.1.1 128734,128735 2ehjA 208 75.89 2akaB 299 81.71 c.37.1.8 126914 2go9A 161 85.90 1fdr 248 86.05 1vjnA 220 88.66 d.157.1.4 100825