# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g9oA 91 9.03e-14 b.36.1.1 60400 1tp5A 119 9.13e-14 b.36.1.1 119305 2he2A 102 9.42e-14 2ozfA 92 1.02e-13 2v90A 96 1.35e-13 1be9A 119 1.47e-13 b.36.1.1 24774 2he4A 90 1.97e-13 2fneA 117 3.39e-13 b.36.1.1 133813 2jikA 101 3.80e-13 2qg1A 92 3.81e-13 2i1nA 102 3.84e-13 2ocsA 88 4.01e-13 2jilA 97 4.11e-13 1n7eA 97 4.55e-13 b.36.1.1 91691 2iwnA 97 4.89e-13 2awxA 105 4.90e-13 2fe5A 94 5.81e-13 b.36.1.1 133323 2opgA 98 6.51e-13 1qavA 90 7.58e-13 b.36.1.1 24777 2f5yA 91 1.15e-12 b.36.1.1 133015 2gzvA 114 1.27e-12 2pktA 91 1.35e-12 1qauA 112 1.37e-12 b.36.1.1 24779 2q3gA 89 1.53e-12 1kwaA 88 1.90e-12 b.36.1.1 24772 2qkvA 96 2.06e-12 1wf7A 103 3.02e-12 b.36.1.1 114577 1q3oA 109 3.51e-12 b.36.1.1 95700 2iwoA 120 3.66e-12 2q9vA 90 4.01e-12 1ihjA 98 4.11e-12 b.36.1.1 62382 2fcfA 103 5.84e-12 b.36.1.1 133267 2h2bA 107 6.04e-12 2pa1A 87 6.70e-12 2i04A 85 7.06e-12 1l6oA 95 7.94e-12 b.36.1.1 84534 2f0aA 98 7.97e-12 b.36.1.1 132661 2uzcA 88 7.97e-12 1v5lA 103 9.50e-12 b.36.1.1 108378 1x45A 98 1.06e-11 b.36.1.1 121679 2egoA 96 1.19e-11 2vphA 100 1.33e-11 1r6jA 82 2.19e-11 b.36.1.1 97151 3bpuA 88 2.36e-11 2reyA 100 2.38e-11 2rczA 81 3.11e-11 1fc6A 388 4.16e-11 b.36.1.3,c.14.1.2 64738,64739 2h3lA 103 4.83e-11 b.36.1.1 136046 1mfgA 95 7.54e-11 b.36.1.1 79043 1nf3C 128 1.50e-10 b.36.1.1 85596 2eaqA 90 6.36e-10 1y8tA 324 8.33e-06 b.36.1.4,b.47.1.1 122763,122764 2p3wA 112 2.48e-05 1te0A 318 0.000158 b.36.1.4,b.47.1.1 112400,112401 1lcyA 325 0.000224 b.36.1.4,b.47.1.1 73834,73835 1sotA 320 0.002034 b.36.1.4,b.47.1.1 105852,105853 2adzA 178 0.004627 b.55.1.1 126599 1k32A 1045 0.04112 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2i6vA 87 0.3929 2p1zA 180 1.939 1j7xA 302 2.099 c.14.1.2 66425 1qqqA 264 2.877 d.117.1.1 40931 2d5wA 603 3.056 2g8mA 264 3.817 1ha1 184 3.885 1hvyA 288 4.417 d.117.1.1 41049 1evfA 264 4.930 d.117.1.1 40932 1vchA 175 4.989 c.61.1.1 119980 2rgqA 144 5.569 1bkpA 278 6.087 d.117.1.1 41029 1ypvA 313 6.669 2g8oA 264 7.216 d.117.1.1 134779 1g2qA 187 11.94 c.61.1.1 65117 1l3kA 196 12.30 d.58.7.1,d.58.7.1 73539,73540 1ev5A 264 14.65 d.117.1.1 40935 2j3tD 219 19.42 2q6kA 283 20.08 2yzkA 178 20.26 2btuA 346 20.81 1f28A 297 22.45 d.117.1.1 59608 1c9oA 66 23.10 b.40.4.5 25325 2ps1A 226 27.94 2hcrA 326 27.97 1qm9A 198 28.31 d.58.7.1,d.58.7.1 39207,39208 1l1qA 186 29.51 c.61.1.1 77653 1b5eA 246 30.37 d.117.1.1 41056 1dkuA 317 33.18 c.61.1.2,c.61.1.2 34118,34119 1rqpA 299 34.41 b.141.1.1,c.132.1.1 97754,97755 2hzcA 87 35.22 3b4dA 96 40.03 2yyhA 139 40.34 2aeeA 211 41.03 c.61.1.1 126620 2adcA 229 42.42 d.58.7.1,d.58.7.1 126582,126583 1fsgA 233 47.69 c.61.1.1 34029 1o5oA 221 48.34 c.61.1.1 92509 3b3qE 197 53.55 2z1cA 75 53.97 2blnA 305 54.08 b.46.1.1,c.65.1.1 128734,128735 2gebA 185 56.95 2zbvA 263 59.02 1u9yA 284 60.33 c.61.1.2,c.61.1.2 119655,119656 1z2uA 150 63.00 d.20.1.1 124389 2go9A 161 63.52 2nooA 502 66.52 2f4nA 273 68.00 2cw5A 255 69.07 2dy0A 190 69.81 1uldA 150 70.50 b.29.1.3 99545 2jbhA 225 71.50 3bs5A 106 71.64 1l5jA 865 72.36 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 1fdr 248 72.52 2e3dA 302 76.37 1w30A 201 76.92 c.61.1.1 114118 1y0hA 105 78.13 d.58.4.11 116303 1wexA 104 78.96 d.58.7.1 114568 1bd3A 243 79.11 c.61.1.1 34098 1mw9X 592 79.20 e.10.1.1 91480 1fxlA 167 81.43 d.58.7.1,d.58.7.1 39183,39184 2d9iA 96 81.44 1wd5A 208 88.93 c.61.1.1 114524 1mjc 69 89.44