# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tp5A 119 1.37e-14 b.36.1.1 119305 2ozfA 92 1.99e-14 1g9oA 91 2.26e-14 b.36.1.1 60400 1be9A 119 2.35e-14 b.36.1.1 24774 2he2A 102 2.69e-14 2v90A 96 3.61e-14 2he4A 90 4.41e-14 1n7eA 97 8.84e-14 b.36.1.1 91691 2jikA 101 1.24e-13 2fneA 117 1.29e-13 b.36.1.1 133813 2ocsA 88 1.37e-13 2i1nA 102 1.51e-13 2qg1A 92 1.77e-13 2iwnA 97 1.84e-13 2jilA 97 1.93e-13 2awxA 105 2.07e-13 2fe5A 94 2.52e-13 b.36.1.1 133323 2q3gA 89 2.56e-13 1qavA 90 3.04e-13 b.36.1.1 24777 2opgA 98 3.18e-13 2gzvA 114 4.03e-13 1wf7A 103 4.04e-13 b.36.1.1 114577 2pktA 91 5.45e-13 2f5yA 91 5.48e-13 b.36.1.1 133015 1v5lA 103 7.18e-13 b.36.1.1 108378 1qauA 112 8.12e-13 b.36.1.1 24779 1q3oA 109 9.67e-13 b.36.1.1 95700 1kwaA 88 9.82e-13 b.36.1.1 24772 2iwoA 120 1.06e-12 2qkvA 96 1.50e-12 2pa1A 87 1.65e-12 2q9vA 90 2.31e-12 2h2bA 107 2.61e-12 1ihjA 98 2.69e-12 b.36.1.1 62382 2uzcA 88 2.69e-12 2fcfA 103 2.72e-12 b.36.1.1 133267 1r6jA 82 3.33e-12 b.36.1.1 97151 2f0aA 98 3.62e-12 b.36.1.1 132661 2i04A 85 3.84e-12 2egoA 96 4.09e-12 1x45A 98 4.27e-12 b.36.1.1 121679 1l6oA 95 5.30e-12 b.36.1.1 84534 1fc6A 388 6.62e-12 b.36.1.3,c.14.1.2 64738,64739 2rczA 81 9.72e-12 2vphA 100 1.06e-11 2h3lA 103 1.15e-11 b.36.1.1 136046 3bpuA 88 2.15e-11 1mfgA 95 2.80e-11 b.36.1.1 79043 2reyA 100 4.44e-11 1nf3C 128 1.09e-10 b.36.1.1 85596 2eaqA 90 4.73e-10 1y8tA 324 5.41e-06 b.36.1.4,b.47.1.1 122763,122764 2p3wA 112 6.97e-06 1lcyA 325 9.36e-05 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 0.000148 b.36.1.4,b.47.1.1 112400,112401 1sotA 320 0.000585 b.36.1.4,b.47.1.1 105852,105853 1k32A 1045 0.002888 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2adzA 178 0.01998 b.55.1.1 126599 2i6vA 87 0.1389 2p1zA 180 0.6586 1j7xA 302 1.159 c.14.1.2 66425 1vchA 175 1.454 c.61.1.1 119980 2ps1A 226 1.709 2d5wA 603 2.448 2aeeA 211 3.323 c.61.1.1 126620 1g2qA 187 4.192 c.61.1.1 65117 2rgqA 144 4.580 1dkuA 317 4.670 c.61.1.2,c.61.1.2 34118,34119 1f28A 297 4.827 d.117.1.1 59608 2yzkA 178 5.643 1zn8A 180 6.524 c.61.1.1 125376 1vraB 215 6.672 1cjbA 231 7.096 c.61.1.1 34079 1hvyA 288 7.252 d.117.1.1 41049 1rqpA 299 7.291 b.141.1.1,c.132.1.1 97754,97755 2z1cA 75 7.706 2hcrA 326 8.155 2g8mA 264 8.185 1l3kA 196 8.375 d.58.7.1,d.58.7.1 73539,73540 2vefA 314 8.555 1bkpA 278 9.509 d.117.1.1 41029 2dy0A 190 10.50 1u9yA 284 11.17 c.61.1.2,c.61.1.2 119655,119656 2gebA 185 11.25 2g8oA 264 11.58 d.117.1.1 134779 2j3tD 219 11.87 1l1qA 186 12.30 c.61.1.1 77653 1ypvA 313 12.83 2q6kA 283 13.19 1aj2A 282 13.75 c.1.21.1 29665 1aj2 282 14.53 1krhA 338 14.66 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1ha1 184 14.68 1bd3A 243 14.73 c.61.1.1 34098 1fsgA 233 14.89 c.61.1.1 34029 1qqqA 264 14.93 d.117.1.1 40931 1o4uA 285 15.35 c.1.17.1,d.41.2.1 86624,86625 2zbvA 263 15.81 1o5oA 221 16.08 c.61.1.1 92509 2jbhA 225 17.66 1evfA 264 17.80 d.117.1.1 40932 1vdmA 153 19.13 c.61.1.1 119994 1s98A 107 19.15 b.124.1.1 105377 2f4nA 273 19.83 1z7gA 217 20.42 c.61.1.1 124624 1r94A 118 21.64 b.124.1.1 97251 2adcA 229 22.24 d.58.7.1,d.58.7.1 126582,126583 2cw5A 255 22.58 1wd5A 208 24.11 c.61.1.1 114524 1j7jA 178 25.63 c.61.1.1 84131 1l5jA 865 25.98 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 1v9sA 208 28.04 c.61.1.1 119894 2e3dA 302 28.89 1hgxA 183 31.29 c.61.1.1 34027 1i0lA 221 31.71 c.61.1.1 71096 2bekA 257 35.25 1ir6A 424 35.93 c.107.1.2 71342 1t6t1 118 38.92 2gc1A 188 41.34 b.82.1.7 134928 1xm7A 195 41.60 d.159.1.8 115473 2yyhA 139 41.92 2pqmA 343 42.84 1xttA 216 46.01 c.61.1.1 122300 1vctA 205 48.70 a.7.12.1,d.286.1.1 119986,119987 1tx2A 297 51.61 c.1.21.1 107420 1c9oA 66 52.54 b.40.4.5 25325 2ax4A 198 53.71 2btuA 346 53.85 1at0 145 53.91 1nwbA 124 54.21 b.124.1.1 86296 2aefA 234 54.68 1s8nA 205 55.26 c.23.1.1 105374 2vgaA 207 55.95 1at0A 145 56.96 b.86.1.1 28374 2ehjA 208 58.26 1zh5A 195 58.61 a.4.5.46,d.58.7.1 125073,125074 1ad1A 266 62.42 c.1.21.1 29668 2o38A 120 63.62 3bs5A 106 64.86 2e55A 208 65.51 1tc1A 220 65.83 c.61.1.1 34083 1ev5A 264 66.28 d.117.1.1 40935 1cukA 203 67.19 a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 2j73A 103 69.48 1fxlA 167 70.52 d.58.7.1,d.58.7.1 39183,39184 2q40A 367 70.99 e.50.1.1 139814 1mi8A 158 73.94 b.86.1.2 91279 1vjnA 220 75.14 d.157.1.4 100825 1qm9A 198 75.50 d.58.7.1,d.58.7.1 39207,39208 2jfrA 234 76.44 2bgiA 272 76.58 2otmA 154 76.91 2dztA 248 77.92 2d9iA 96 78.65 2a6cA 83 80.39 a.35.1.13 126236 2fliA 220 81.12 c.1.2.2 133714 1l7bA 92 81.72 c.15.1.2 91053 1b5eA 246 82.45 d.117.1.1 41056 1gutA 68 82.47 b.40.6.1 65576 2h1rA 299 82.90 1a62A 130 83.34 a.140.3.1,b.40.4.5 64708,64709 1mw9X 592 84.61 e.10.1.1 91480 1xk5A 204 85.42 2yx0A 342 86.69 1yioA 208 88.09 a.4.6.2,c.23.1.1 123326,123327 1fdr 248 88.63 1lngA 87 89.89 d.201.1.1 74045