# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g9oA	91	2.86e-13	b.36.1.1	60400
2ozfA	92	3.59e-13		
1tp5A	119	3.97e-13	b.36.1.1	119305
2he2A	102	4.92e-13		
1be9A	119	5.09e-13	b.36.1.1	24774
2v90A	96	5.74e-13		
2he4A	90	6.96e-13		
2qg1A	92	1.14e-12		
2fneA	117	1.45e-12	b.36.1.1	133813
2ocsA	88	1.80e-12		
2iwnA	97	2.06e-12		
1n7eA	97	2.13e-12	b.36.1.1	91691
2i1nA	102	2.61e-12		
2opgA	98	2.85e-12		
2fe5A	94	3.79e-12	b.36.1.1	133323
2jikA	101	3.93e-12		
2awxA	105	4.14e-12		
2f5yA	91	4.49e-12	b.36.1.1	133015
2pktA	91	5.56e-12		
2jilA	97	5.79e-12		
1qavA	90	7.17e-12	b.36.1.1	24777
2q3gA	89	7.56e-12		
1qauA	112	8.01e-12	b.36.1.1	24779
2gzvA	114	1.12e-11		
1kwaA	88	1.28e-11	b.36.1.1	24772
1wf7A	103	1.30e-11	b.36.1.1	114577
2qkvA	96	1.66e-11		
1q3oA	109	1.73e-11	b.36.1.1	95700
2pa1A	87	1.75e-11		
2iwoA	120	2.26e-11		
1v5lA	103	2.33e-11	b.36.1.1	108378
2fcfA	103	2.76e-11	b.36.1.1	133267
1l6oA	95	3.63e-11	b.36.1.1	84534
2h2bA	107	3.94e-11		
2uzcA	88	3.99e-11		
2egoA	96	4.00e-11		
2f0aA	98	4.00e-11	b.36.1.1	132661
2i04A	85	4.25e-11		
2vphA	100	5.03e-11		
2q9vA	90	5.07e-11		
1r6jA	82	6.11e-11	b.36.1.1	97151
1ihjA	98	6.28e-11	b.36.1.1	62382
3bpuA	88	9.04e-11		
1fc6A	388	9.71e-11	b.36.1.3,c.14.1.2	64738,64739
1x45A	98	1.21e-10	b.36.1.1	121679
2reyA	100	1.87e-10		
2h3lA	103	3.40e-10	b.36.1.1	136046
2rczA	81	7.91e-10		
1mfgA	95	9.25e-10	b.36.1.1	79043
1nf3C	128	2.09e-09	b.36.1.1	85596
2eaqA	90	3.02e-09		
1y8tA	324	1.95e-05	b.36.1.4,b.47.1.1	122763,122764
2p3wA	112	2.29e-05		
1lcyA	325	0.000136	b.36.1.4,b.47.1.1	73834,73835
1te0A	318	0.000598	b.36.1.4,b.47.1.1	112400,112401
1sotA	320	0.001447	b.36.1.4,b.47.1.1	105852,105853
2adzA	178	0.001695	b.55.1.1	126599
1k32A	1045	0.05135	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.2859	c.14.1.2	66425
2i6vA	87	1.254		
1vchA	175	1.344	c.61.1.1	119980
2p1zA	180	1.478		
2g8mA	264	2.191		
2g8oA	264	2.902	d.117.1.1	134779
2d5wA	603	3.427		
2rgqA	144	3.489		
1qqqA	264	3.597	d.117.1.1	40931
1ypvA	313	3.700		
1hvyA	288	3.818	d.117.1.1	41049
1bkpA	278	6.110	d.117.1.1	41029
2yzkA	178	6.630		
1evfA	264	6.645	d.117.1.1	40932
1f28A	297	8.806	d.117.1.1	59608
1dkuA	317	10.42	c.61.1.2,c.61.1.2	34118,34119
2hcrA	326	11.39		
2aeeA	211	12.05	c.61.1.1	126620
1t71A	281	14.10	d.159.1.9	112283
1ev5A	264	15.50	d.117.1.1	40935
1u9yA	284	18.26	c.61.1.2,c.61.1.2	119655,119656
1bd3A	243	18.64	c.61.1.1	34098
1g2qA	187	19.26	c.61.1.1	65117
1ha1	184	20.26		
1l5jA	865	20.37	a.118.15.1,c.8.2.1,c.83.1.1	73592,73593,73594
1l1qA	186	21.76	c.61.1.1	77653
2ps1A	226	22.05		
2q6kA	283	25.63		
1c9oA	66	29.47	b.40.4.5	25325
1z2uA	150	30.47	d.20.1.1	124389
2e3dA	302	36.02		
2j3tD	219	39.01		
1rqpA	299	39.16	b.141.1.1,c.132.1.1	97754,97755
2dkaA	544	39.56		
2gebA	185	40.06		
1s98A	107	43.26	b.124.1.1	105377
2dy0A	190	43.50		
1zn8A	180	43.52	c.61.1.1	125376
1o5oA	221	44.80	c.61.1.1	92509
2blnA	305	45.94	b.46.1.1,c.65.1.1	128734,128735
2ax4A	198	47.69		
1vjnA	220	47.99	d.157.1.4	100825
2nooA	502	48.40		
1b5eA	246	49.70	d.117.1.1	41056
1zdnA	158	50.22	d.20.1.1	124943
2yx0A	342	52.26		
2chcA	170	55.81		
2go9A	161	56.54		
2o7iA	592	58.31		
2hzcA	87	58.61		
2z1cA	75	60.66		
1mw9X	592	60.69	e.10.1.1	91480
2yyhA	139	60.88		
1l3kA	196	63.86	d.58.7.1,d.58.7.1	73539,73540
1wd5A	208	65.30	c.61.1.1	114524
2orwA	184	65.74		
1r94A	118	66.43	b.124.1.1	97251
1zcoA	262	69.30		
2btuA	346	71.90		
1jatA	155	71.99	d.20.1.1	62818
1aj2	282	72.41		
1vr5A	547	75.20	c.94.1.1	120437
1h5rA	293	76.92	c.68.1.6	65623
1uldA	150	78.06	b.29.1.3	99545
2zbvA	263	78.70		
2akaB	299	80.61	c.37.1.8	126914
1mjc	69	84.14		
3bs5A	106	84.64		
1a62A	130	84.88	a.140.3.1,b.40.4.5	64708,64709
2cw5A	255	85.15		
2f4nA	273	86.13		
1j7jA	178	87.55	c.61.1.1	84131
1z7xW	461	88.74	c.10.1.1	124675
1qm9A	198	89.97	d.58.7.1,d.58.7.1	39207,39208