# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g9oA	91	3.08e-12	b.36.1.1	60400
2ozfA	92	3.47e-12		
1tp5A	119	3.78e-12	b.36.1.1	119305
2he2A	102	4.01e-12		
1be9A	119	5.09e-12	b.36.1.1	24774
2v90A	96	5.78e-12		
2he4A	90	6.12e-12		
2qg1A	92	9.19e-12		
2fneA	117	1.08e-11	b.36.1.1	133813
2ocsA	88	1.44e-11		
1n7eA	97	1.63e-11	b.36.1.1	91691
2i1nA	102	1.68e-11		
2iwnA	97	1.69e-11		
2jikA	101	2.01e-11		
2opgA	98	2.20e-11		
2awxA	105	2.25e-11		
2fe5A	94	2.34e-11	b.36.1.1	133323
2jilA	97	2.98e-11		
2f5yA	91	3.00e-11	b.36.1.1	133015
1qavA	90	3.88e-11	b.36.1.1	24777
2pktA	91	5.27e-11		
2q3gA	89	5.43e-11		
1qauA	112	5.61e-11	b.36.1.1	24779
2gzvA	114	6.95e-11		
1kwaA	88	7.20e-11	b.36.1.1	24772
1q3oA	109	9.94e-11	b.36.1.1	95700
1wf7A	103	1.01e-10	b.36.1.1	114577
2qkvA	96	1.14e-10		
2iwoA	120	1.15e-10		
2pa1A	87	1.18e-10		
2fcfA	103	1.28e-10	b.36.1.1	133267
1l6oA	95	1.80e-10	b.36.1.1	84534
1v5lA	103	1.81e-10	b.36.1.1	108378
2f0aA	98	2.16e-10	b.36.1.1	132661
2h2bA	107	2.25e-10		
2uzcA	88	2.30e-10		
2i04A	85	2.44e-10		
1ihjA	98	2.48e-10	b.36.1.1	62382
2q9vA	90	2.64e-10		
2egoA	96	3.66e-10		
2vphA	100	4.64e-10		
1x45A	98	4.75e-10	b.36.1.1	121679
1r6jA	82	4.87e-10	b.36.1.1	97151
1fc6A	388	6.52e-10	b.36.1.3,c.14.1.2	64738,64739
3bpuA	88	6.61e-10		
2reyA	100	9.10e-10		
2h3lA	103	1.71e-09	b.36.1.1	136046
2rczA	81	2.97e-09		
1mfgA	95	3.68e-09	b.36.1.1	79043
1nf3C	128	9.60e-09	b.36.1.1	85596
2eaqA	90	1.74e-08		
2p3wA	112	8.68e-05		
1y8tA	324	9.26e-05	b.36.1.4,b.47.1.1	122763,122764
1lcyA	325	0.000311	b.36.1.4,b.47.1.1	73834,73835
1te0A	318	0.001465	b.36.1.4,b.47.1.1	112400,112401
2adzA	178	0.002110	b.55.1.1	126599
1sotA	320	0.004284	b.36.1.4,b.47.1.1	105852,105853
1k32A	1045	0.1147	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.3862	c.14.1.2	66425
2p1zA	180	1.443		
1vchA	175	2.559	c.61.1.1	119980
2i6vA	87	3.096		
2d5wA	603	5.281		
2rgqA	144	6.427		
1ypvA	313	6.739		
1hvyA	288	7.336	d.117.1.1	41049
2yzkA	178	7.609		
2g8mA	264	9.160		
2g8oA	264	9.334	d.117.1.1	134779
1qqqA	264	9.580	d.117.1.1	40931
2hcrA	326	13.39		
2ps1A	226	13.41		
1dkuA	317	13.50	c.61.1.2,c.61.1.2	34118,34119
2aeeA	211	13.87	c.61.1.1	126620
1bkpA	278	14.18	d.117.1.1	41029
1f28A	297	14.45	d.117.1.1	59608
1evfA	264	17.09	d.117.1.1	40932
1g2qA	187	17.72	c.61.1.1	65117
1l1qA	186	17.92	c.61.1.1	77653
1u9yA	284	19.33	c.61.1.2,c.61.1.2	119655,119656
1l5jA	865	22.79	a.118.15.1,c.8.2.1,c.83.1.1	73592,73593,73594
1bd3A	243	31.34	c.61.1.1	34098
2btuA	346	35.21		
1z2uA	150	35.38	d.20.1.1	124389
1c9oA	66	38.30	b.40.4.5	25325
2dy0A	190	38.30		
1zn8A	180	40.12	c.61.1.1	125376
2e3dA	302	40.70		
1ha1	184	43.13		
2q6kA	283	44.23		
1ev5A	264	44.55	d.117.1.1	40935
1t71A	281	44.63	d.159.1.9	112283
2gebA	185	45.04		
2yx0A	342	46.59		
2blnA	305	48.07	b.46.1.1,c.65.1.1	128734,128735
2dkaA	544	48.63		
1zdnA	158	49.68	d.20.1.1	124943
1vjnA	220	55.37	d.157.1.4	100825
1rqpA	299	55.95	b.141.1.1,c.132.1.1	97754,97755
2go9A	161	57.97		
2nooA	502	59.03		
3b3qE	197	60.58		
1wd5A	208	61.65	c.61.1.1	114524
2jbhA	225	66.38		
2orwA	184	71.11		
2hzcA	87	71.26		
2j73A	103	73.04		
1qm9A	198	73.76	d.58.7.1,d.58.7.1	39207,39208
2ax4A	198	74.43		
2j3tD	219	74.81		
2o7iA	592	77.07		
1jatA	155	77.64	d.20.1.1	62818
1b5eA	246	78.30	d.117.1.1	41056
2z2uA	311	85.36		
1w30A	201	86.06	c.61.1.1	114118
1fsgA	233	86.08	c.61.1.1	34029
3bs5A	106	86.88		
1zcoA	262	89.63