# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g9oA	91	1.13e-11	b.36.1.1	60400
2v90A	96	1.28e-11		
1tp5A	119	1.30e-11	b.36.1.1	119305
2ozfA	92	1.36e-11		
2he2A	102	1.50e-11		
1be9A	119	1.68e-11	b.36.1.1	24774
2he4A	90	2.65e-11		
2fneA	117	4.77e-11	b.36.1.1	133813
2qg1A	92	5.04e-11		
2ocsA	88	5.06e-11		
2i1nA	102	6.18e-11		
2awxA	105	6.59e-11		
2iwnA	97	6.81e-11		
2jilA	97	6.99e-11		
2jikA	101	7.40e-11		
2opgA	98	8.74e-11		
2fe5A	94	9.70e-11	b.36.1.1	133323
1n7eA	97	9.74e-11	b.36.1.1	91691
2f5yA	91	1.16e-10	b.36.1.1	133015
2q3gA	89	1.20e-10		
2pktA	91	1.34e-10		
1qavA	90	1.76e-10	b.36.1.1	24777
1qauA	112	2.03e-10	b.36.1.1	24779
2qkvA	96	2.87e-10		
1wf7A	103	2.93e-10	b.36.1.1	114577
1q3oA	109	3.03e-10	b.36.1.1	95700
1kwaA	88	3.19e-10	b.36.1.1	24772
2iwoA	120	3.28e-10		
2gzvA	114	3.53e-10		
2pa1A	87	3.85e-10		
2uzcA	88	5.19e-10		
2f0aA	98	5.64e-10	b.36.1.1	132661
1v5lA	103	5.66e-10	b.36.1.1	108378
2h2bA	107	5.85e-10		
2q9vA	90	6.00e-10		
2fcfA	103	6.50e-10	b.36.1.1	133267
1l6oA	95	7.71e-10	b.36.1.1	84534
2egoA	96	8.89e-10		
2vphA	100	9.45e-10		
2i04A	85	9.79e-10		
1ihjA	98	1.00e-09	b.36.1.1	62382
1r6jA	82	1.32e-09	b.36.1.1	97151
1fc6A	388	1.74e-09	b.36.1.3,c.14.1.2	64738,64739
3bpuA	88	1.82e-09		
2reyA	100	2.23e-09		
1x45A	98	2.36e-09	b.36.1.1	121679
2h3lA	103	3.89e-09	b.36.1.1	136046
1mfgA	95	1.02e-08	b.36.1.1	79043
2rczA	81	1.06e-08		
1nf3C	128	1.73e-08	b.36.1.1	85596
2eaqA	90	2.71e-08		
1y8tA	324	0.000108	b.36.1.4,b.47.1.1	122763,122764
2p3wA	112	0.000134		
1lcyA	325	0.000843	b.36.1.4,b.47.1.1	73834,73835
1te0A	318	0.002213	b.36.1.4,b.47.1.1	112400,112401
2adzA	178	0.004572	b.55.1.1	126599
1sotA	320	0.007061	b.36.1.4,b.47.1.1	105852,105853
1k32A	1045	0.03591	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.4569	c.14.1.2	66425
2i6vA	87	0.7619		
2p1zA	180	1.093		
2g8mA	264	2.448		
1vchA	175	2.480	c.61.1.1	119980
1hvyA	288	3.647	d.117.1.1	41049
2g8oA	264	4.235	d.117.1.1	134779
2rgqA	144	4.306		
1ypvA	313	5.110		
2ps1A	226	6.233		
1qqqA	264	6.346	d.117.1.1	40931
2yzkA	178	7.010		
2aeeA	211	7.691	c.61.1.1	126620
1evfA	264	8.109	d.117.1.1	40932
1bkpA	278	8.759	d.117.1.1	41029
1g2qA	187	9.090	c.61.1.1	65117
2d5wA	603	10.59		
1f28A	297	13.13	d.117.1.1	59608
1ha1	184	15.60		
2hcrA	326	17.07		
2dy0A	190	17.61		
2gebA	185	23.41		
1t71A	281	24.02	d.159.1.9	112283
1fsgA	233	26.36	c.61.1.1	34029
1dkuA	317	27.33	c.61.1.2,c.61.1.2	34118,34119
1ev5A	264	27.77	d.117.1.1	40935
1zn8A	180	29.66	c.61.1.1	125376
1l5jA	865	30.44	a.118.15.1,c.8.2.1,c.83.1.1	73592,73593,73594
1c9oA	66	31.54	b.40.4.5	25325
2akaB	299	38.39	c.37.1.8	126914
2j3tD	219	39.84		
2q6kA	283	39.87		
2yx0A	342	42.69		
1b5eA	246	44.35	d.117.1.1	41056
1u9yA	284	47.13	c.61.1.2,c.61.1.2	119655,119656
1bd3A	243	49.47	c.61.1.1	34098
1j7jA	178	51.23	c.61.1.1	84131
2z1cA	75	54.56		
1l1qA	186	55.42	c.61.1.1	77653
2jbhA	225	56.80		
1l3kA	196	58.76	d.58.7.1,d.58.7.1	73539,73540
2dkaA	544	60.56		
1wd5A	208	62.03	c.61.1.1	114524
1uldA	150	62.12	b.29.1.3	99545
1byiA	224	65.09	c.37.1.10	32199
1w30A	201	67.27	c.61.1.1	114118
3bs5A	106	70.84		
2z2uA	311	73.97		
1ow1A	195	79.89	b.131.1.3	93625
3b3qE	197	79.92		
2yyhA	139	80.76		
1vdmA	153	81.66	c.61.1.1	119994
2nooA	502	83.36		
1rqpA	299	83.76	b.141.1.1,c.132.1.1	97754,97755
1i0lA	221	84.29	c.61.1.1	71096