# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2he2A 102 3.60e-13 1g9oA 91 4.44e-13 b.36.1.1 60400 2ozfA 92 5.92e-13 1tp5A 119 6.08e-13 b.36.1.1 119305 2v90A 96 9.10e-13 2jilA 97 1.26e-12 1be9A 119 1.26e-12 b.36.1.1 24774 2he4A 90 1.39e-12 2qg1A 92 2.11e-12 2iwoA 120 2.51e-12 2ocsA 88 2.68e-12 2iwnA 97 3.41e-12 1n7eA 97 4.34e-12 b.36.1.1 91691 2i1nA 102 4.39e-12 1qavA 90 4.50e-12 b.36.1.1 24777 2awxA 105 4.51e-12 2pktA 91 4.88e-12 2jikA 101 5.50e-12 2opgA 98 5.57e-12 1kwaA 88 6.24e-12 b.36.1.1 24772 2fe5A 94 6.65e-12 b.36.1.1 133323 1wf7A 103 7.26e-12 b.36.1.1 114577 2f5yA 91 7.80e-12 b.36.1.1 133015 2q3gA 89 7.89e-12 1qauA 112 1.37e-11 b.36.1.1 24779 2gzvA 114 1.43e-11 2fneA 117 1.66e-11 b.36.1.1 133813 1q3oA 109 1.71e-11 b.36.1.1 95700 2qkvA 96 2.30e-11 2pa1A 87 2.70e-11 2fcfA 103 3.61e-11 b.36.1.1 133267 2uzcA 88 3.94e-11 1ihjA 98 4.35e-11 b.36.1.1 62382 2q9vA 90 4.91e-11 2h2bA 107 5.52e-11 1v5lA 103 6.13e-11 b.36.1.1 108378 2vphA 100 6.54e-11 2egoA 96 6.65e-11 2i04A 85 6.81e-11 1l6oA 95 7.34e-11 b.36.1.1 84534 1r6jA 82 1.08e-10 b.36.1.1 97151 2f0aA 98 1.48e-10 b.36.1.1 132661 3bpuA 88 1.75e-10 1x45A 98 1.85e-10 b.36.1.1 121679 2reyA 100 2.31e-10 2h3lA 103 3.54e-10 b.36.1.1 136046 1nf3C 128 6.47e-10 b.36.1.1 85596 1mfgA 95 6.94e-10 b.36.1.1 79043 2rczA 81 7.61e-10 2eaqA 90 1.69e-09 1fc6A 388 1.43e-07 b.36.1.3,c.14.1.2 64738,64739 2p3wA 112 6.19e-05 1lcyA 325 0.000335 b.36.1.4,b.47.1.1 73834,73835 2adzA 178 0.002592 b.55.1.1 126599 1te0A 318 0.04464 b.36.1.4,b.47.1.1 112400,112401 1y8tA 324 0.05741 b.36.1.4,b.47.1.1 122763,122764 2p1zA 180 0.8624 1j7xA 302 1.148 c.14.1.2 66425 2i6vA 87 1.186 1vchA 175 1.686 c.61.1.1 119980 1byiA 224 2.350 c.37.1.10 32199 2aeeA 211 2.550 c.61.1.1 126620 1l1qA 186 5.369 c.61.1.1 77653 1ha1 184 6.611 1yp2A 451 6.895 b.81.1.4,c.68.1.6 123798,123799 1sotA 320 7.369 b.36.1.4,b.47.1.1 105852,105853 3bpkA 206 8.184 1g2qA 187 8.328 c.61.1.1 65117 2yzkA 178 8.453 2ps1A 226 8.574 2rgqA 144 8.647 1l5jA 865 10.29 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 1qr6A 584 11.26 c.2.1.7,c.58.1.3 30293,33941 1b5eA 246 12.58 d.117.1.1 41056 1l3kA 196 12.61 d.58.7.1,d.58.7.1 73539,73540 1zn8A 180 12.78 c.61.1.1 125376 2d1gA 498 13.11 2dkaA 544 13.33 1fjmA 330 13.84 d.159.1.3 42082 1vf8A 377 13.93 c.1.8.5,d.26.3.1 120029,120030 2epgA 487 14.82 2akaB 299 15.29 c.37.1.8 126914 1gzwA 134 16.57 b.29.1.3 90535 3b3qE 197 17.77 2dy0A 190 20.08 2ganA 190 22.33 d.108.1.1 134889 2o7iA 592 22.43 1j7jA 178 25.53 c.61.1.1 84131 2q40A 367 25.93 e.50.1.1 139814 2yx0A 342 26.05 2gebA 185 26.96 3b5mA 205 28.31 2pgeA 377 29.16 1rqpA 299 29.24 b.141.1.1,c.132.1.1 97754,97755 1t71A 281 32.75 d.159.1.9 112283 2hkjA 469 32.82 a.156.1.3,d.14.1.3,d.122.1.2 136553,136554,136555 1a6cA 513 33.08 b.121.4.2,b.121.4.2,b.121.4.2 23296,23297,23298 1qs0A 407 34.18 c.36.1.11 31829 1dkuA 317 36.53 c.61.1.2,c.61.1.2 34118,34119 2ci9A 102 38.15 2grvA 621 38.72 1qhxA 178 39.22 c.37.1.3 31936 2dx0A 138 39.24 1lam 484 40.13 1p0kA 349 40.94 c.1.4.1 87648 1c9oA 66 41.36 b.40.4.5 25325 2gj2A 85 41.65 1vkhA 273 42.92 c.69.1.32 108662 1jc4A 148 43.81 d.32.1.4 62863 1qwgA 251 45.83 c.1.27.1 96473 1amxA 180 45.92 b.2.3.1 22410 2vr4A 846 46.42 1fsgA 233 47.09 c.61.1.1 34029 1wkyA 464 47.99 b.18.1.31,c.1.8.3 120992,120993 1xrsA 516 48.11 c.1.19.4 115883 2j3tD 219 48.68 2f4nA 273 50.01 1z9pA 155 51.85 2vesA 299 52.82 1y0bA 197 52.88 c.61.1.1 122476 1se8A 301 53.44 b.40.4.3 105448 2orwA 184 54.92 2zbvA 263 55.70 1fohA 664 56.56 c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 1xccA 220 57.32 c.47.1.10 115113 2qcvA 332 58.37 2adbA 148 58.64 d.58.7.1 126581 2blnA 305 59.66 b.46.1.1,c.65.1.1 128734,128735 2jbhA 225 59.82 1uqwA 509 59.93 c.94.1.1 99799 3tmkA 216 61.72 c.37.1.1 31920 1qorA 327 63.46 b.35.1.2,c.2.1.1 24766,29782 2e87A 357 64.75 1jalA 363 66.82 c.37.1.8,d.15.10.2 84138,84139 1vjnA 220 69.34 d.157.1.4 100825 2e3dA 302 69.50 2ha9A 446 69.54 1oqvA 192 70.18 d.24.1.2 87320 2c0hA 353 70.54 c.1.8.3 129594 1juhA 350 71.15 b.82.1.5 71884 1l2uA 245 72.24 c.1.2.3 73516 1pieA 419 72.65 d.14.1.5,d.58.26.7 94706,94707 2ze0A 555 72.66 1fukA 165 73.64 c.37.1.19 32409 1c96A 753 74.37 c.8.2.1,c.83.1.1 30727,35403 1hkkA 364 74.79 c.1.8.5,d.26.3.1 90634,90635 1u9yA 284 75.45 c.61.1.2,c.61.1.2 119655,119656 1w30A 201 76.96 c.61.1.1 114118 1jvbA 347 78.18 b.35.1.2,c.2.1.1 77181,77182 2nt0A 497 79.19 b.71.1.2,c.1.8.3 138561,138562 2qu8A 228 79.31 2z1cA 75 80.15 2g1pA 278 81.52 3b9gA 328 84.09 2hjhA 354 84.66 2ywuA 181 85.50 2cmdA 312 86.14 c.2.1.5,d.162.1.1 30135,42102 1vdmA 153 87.68 c.61.1.1 119994