# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ozfA	92	7.62e-12		
1g9oA	91	7.83e-12	b.36.1.1	60400
1tp5A	119	8.43e-12	b.36.1.1	119305
2he2A	102	9.16e-12		
2v90A	96	9.55e-12		
1be9A	119	9.91e-12	b.36.1.1	24774
2he4A	90	1.46e-11		
2qg1A	92	2.26e-11		
2fneA	117	3.43e-11	b.36.1.1	133813
2ocsA	88	3.44e-11		
2i1nA	102	3.63e-11		
2iwnA	97	3.84e-11		
2awxA	105	4.95e-11		
2jikA	101	5.07e-11		
1n7eA	97	5.44e-11	b.36.1.1	91691
2opgA	98	5.82e-11		
2jilA	97	6.52e-11		
2fe5A	94	6.67e-11	b.36.1.1	133323
2f5yA	91	8.34e-11	b.36.1.1	133015
2pktA	91	8.93e-11		
2q3gA	89	1.01e-10		
1qauA	112	1.14e-10	b.36.1.1	24779
1qavA	90	1.34e-10	b.36.1.1	24777
1kwaA	88	1.61e-10	b.36.1.1	24772
1q3oA	109	1.82e-10	b.36.1.1	95700
2qkvA	96	1.82e-10		
2gzvA	114	2.31e-10		
1wf7A	103	2.60e-10	b.36.1.1	114577
2iwoA	120	2.65e-10		
2h2bA	107	3.51e-10		
2fcfA	103	3.82e-10	b.36.1.1	133267
2f0aA	98	4.16e-10	b.36.1.1	132661
2pa1A	87	4.25e-10		
1ihjA	98	4.82e-10	b.36.1.1	62382
2egoA	96	5.27e-10		
1l6oA	95	5.45e-10	b.36.1.1	84534
2uzcA	88	5.58e-10		
2q9vA	90	5.83e-10		
1v5lA	103	5.92e-10	b.36.1.1	108378
2vphA	100	7.61e-10		
2i04A	85	8.63e-10		
1r6jA	82	9.16e-10	b.36.1.1	97151
3bpuA	88	1.26e-09		
1x45A	98	1.30e-09	b.36.1.1	121679
2reyA	100	1.42e-09		
1fc6A	388	1.43e-09	b.36.1.3,c.14.1.2	64738,64739
2h3lA	103	2.75e-09	b.36.1.1	136046
1mfgA	95	5.11e-09	b.36.1.1	79043
2rczA	81	7.69e-09		
1nf3C	128	9.51e-09	b.36.1.1	85596
2eaqA	90	2.77e-08		
1y8tA	324	0.000146	b.36.1.4,b.47.1.1	122763,122764
2p3wA	112	0.000149		
1lcyA	325	0.001980	b.36.1.4,b.47.1.1	73834,73835
1te0A	318	0.002709	b.36.1.4,b.47.1.1	112400,112401
2adzA	178	0.002888	b.55.1.1	126599
1sotA	320	0.008394	b.36.1.4,b.47.1.1	105852,105853
1k32A	1045	0.09042	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.5731	c.14.1.2	66425
2p1zA	180	0.9399		
1vchA	175	3.347	c.61.1.1	119980
2i6vA	87	3.829		
2g8mA	264	5.060		
1qqqA	264	6.236	d.117.1.1	40931
2d5wA	603	6.542		
1hvyA	288	7.141	d.117.1.1	41049
2rgqA	144	7.150		
2yzkA	178	7.416		
1ypvA	313	8.506		
2g8oA	264	8.972	d.117.1.1	134779
1evfA	264	8.996	d.117.1.1	40932
2aeeA	211	9.079	c.61.1.1	126620
1g2qA	187	9.927	c.61.1.1	65117
2ps1A	226	11.13		
1bkpA	278	16.80	d.117.1.1	41029
1ha1	184	20.22		
1f28A	297	21.24	d.117.1.1	59608
2dy0A	190	26.48		
1ev5A	264	27.99	d.117.1.1	40935
2hcrA	326	28.29		
2gebA	185	29.85		
1l5jA	865	33.08	a.118.15.1,c.8.2.1,c.83.1.1	73592,73593,73594
1t71A	281	33.84	d.159.1.9	112283
1dkuA	317	35.47	c.61.1.2,c.61.1.2	34118,34119
1fsgA	233	36.13	c.61.1.1	34029
1c9oA	66	36.51	b.40.4.5	25325
1zn8A	180	39.98	c.61.1.1	125376
1bd3A	243	47.21	c.61.1.1	34098
2j3tD	219	47.25		
2yx0A	342	48.96		
1j7jA	178	50.71	c.61.1.1	84131
1l1qA	186	52.16	c.61.1.1	77653
1b5eA	246	52.59	d.117.1.1	41056
2q6kA	283	58.13		
2dkaA	544	62.66		
1l3kA	196	62.79	d.58.7.1,d.58.7.1	73539,73540
1u9yA	284	67.18	c.61.1.2,c.61.1.2	119655,119656
2o7iA	592	70.68		
2jbhA	225	74.12		
2orwA	184	74.45		
3bs5A	106	74.83		
1vr5A	547	76.81	c.94.1.1	120437
3b3qE	197	77.71		
2nooA	502	77.73		
1w30A	201	80.11	c.61.1.1	114118
2yyhA	139	80.80		
1wd5A	208	85.03	c.61.1.1	114524
3bbdA	205	85.41		
2d51A	406	86.44