# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2he2A	102	3.94e-13		
2ozfA	92	4.12e-13		
1g9oA	91	4.14e-13	b.36.1.1	60400
1tp5A	119	6.28e-13	b.36.1.1	119305
1be9A	119	6.55e-13	b.36.1.1	24774
2v90A	96	7.97e-13		
2he4A	90	9.21e-13		
2qg1A	92	1.47e-12		
2ocsA	88	2.14e-12		
2fneA	117	2.27e-12	b.36.1.1	133813
2i1nA	102	2.28e-12		
1n7eA	97	2.65e-12	b.36.1.1	91691
2iwnA	97	2.91e-12		
2jikA	101	3.19e-12		
2jilA	97	3.52e-12		
2opgA	98	3.81e-12		
2awxA	105	4.52e-12		
2fe5A	94	5.68e-12	b.36.1.1	133323
2f5yA	91	6.45e-12	b.36.1.1	133015
1qauA	112	6.65e-12	b.36.1.1	24779
1qavA	90	7.12e-12	b.36.1.1	24777
1wf7A	103	9.74e-12	b.36.1.1	114577
2pktA	91	9.97e-12		
2q3gA	89	1.14e-11		
1kwaA	88	1.18e-11	b.36.1.1	24772
2qkvA	96	1.34e-11		
2gzvA	114	1.40e-11		
1v5lA	103	1.49e-11	b.36.1.1	108378
1q3oA	109	1.69e-11	b.36.1.1	95700
2iwoA	120	1.77e-11		
1l6oA	95	2.90e-11	b.36.1.1	84534
2fcfA	103	3.05e-11	b.36.1.1	133267
2f0aA	98	3.13e-11	b.36.1.1	132661
2pa1A	87	3.19e-11		
2q9vA	90	3.23e-11		
2i04A	85	5.35e-11		
1ihjA	98	5.55e-11	b.36.1.1	62382
2h2bA	107	5.95e-11		
2egoA	96	6.72e-11		
2uzcA	88	7.23e-11		
1x45A	98	7.31e-11	b.36.1.1	121679
2vphA	100	8.43e-11		
1r6jA	82	8.58e-11	b.36.1.1	97151
3bpuA	88	1.33e-10		
2reyA	100	1.60e-10		
1fc6A	388	1.72e-10	b.36.1.3,c.14.1.2	64738,64739
2rczA	81	2.79e-10		
2h3lA	103	4.30e-10	b.36.1.1	136046
1nf3C	128	1.53e-09	b.36.1.1	85596
1mfgA	95	2.28e-09	b.36.1.1	79043
2eaqA	90	2.45e-09		
1y8tA	324	7.89e-05	b.36.1.4,b.47.1.1	122763,122764
2p3wA	112	8.23e-05		
2adzA	178	0.000617	b.55.1.1	126599
1lcyA	325	0.000661	b.36.1.4,b.47.1.1	73834,73835
1te0A	318	0.001543	b.36.1.4,b.47.1.1	112400,112401
1sotA	320	0.002448	b.36.1.4,b.47.1.1	105852,105853
1k32A	1045	0.4203	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	1.014	c.14.1.2	66425
2d5wA	603	3.061		
1vchA	175	3.872	c.61.1.1	119980
1qqqA	264	4.173	d.117.1.1	40931
2p1zA	180	4.177		
2i6vA	87	4.380		
2rgqA	144	4.646		
1hvyA	288	7.536	d.117.1.1	41049
1evfA	264	8.161	d.117.1.1	40932
1f28A	297	8.292	d.117.1.1	59608
2g8mA	264	8.296		
2g8oA	264	11.28	d.117.1.1	134779
1bkpA	278	11.97	d.117.1.1	41029
1ypvA	313	14.94		
1ev5A	264	21.12	d.117.1.1	40935
1g2qA	187	27.17	c.61.1.1	65117
1ha1	184	29.94		
1c9oA	66	31.51	b.40.4.5	25325
2btuA	346	31.81		
2nooA	502	34.13		
2yzkA	178	37.42		
2yx0A	342	38.54		
1l5jA	865	39.79	a.118.15.1,c.8.2.1,c.83.1.1	73592,73593,73594
2hcrA	326	40.14		
2ax4A	198	41.89		
1aj2	282	42.08		
1qm9A	198	44.14	d.58.7.1,d.58.7.1	39207,39208
2q6kA	283	49.81		
1dkuA	317	52.22	c.61.1.2,c.61.1.2	34118,34119
1b5eA	246	53.29	d.117.1.1	41056
3b3qE	197	54.73		
2j3tD	219	55.17		
1vjnA	220	55.24	d.157.1.4	100825
2hzcA	87	56.84		
1n3jA	119	67.13	b.85.7.2	79963
1byiA	224	73.38	c.37.1.10	32199
1l1qA	186	74.37	c.61.1.1	77653
2akaB	299	74.66	c.37.1.8	126914
2yyhA	139	77.16		
2vefA	314	77.85		
1ow1A	195	78.12	b.131.1.3	93625
1fxlA	167	78.12	d.58.7.1,d.58.7.1	39183,39184
2dkaA	544	81.36		
2go9A	161	81.88		
1wd5A	208	82.27	c.61.1.1	114524
2o7iA	592	85.37		
1y0hA	105	86.00	d.58.4.11	116303
2j73A	103	86.78		
1xm7A	195	87.68	d.159.1.8	115473
2orwA	184	88.94		
2etjA	250	89.77	c.55.3.1	132360