# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ozfA	92	3.26e-13		
1g9oA	91	3.44e-13	b.36.1.1	60400
2v90A	96	4.44e-13		
2he2A	102	4.67e-13		
1tp5A	119	5.28e-13	b.36.1.1	119305
1be9A	119	6.48e-13	b.36.1.1	24774
2he4A	90	8.54e-13		
2qg1A	92	1.82e-12		
2fneA	117	2.38e-12	b.36.1.1	133813
2i1nA	102	2.46e-12		
2ocsA	88	2.51e-12		
2iwnA	97	2.71e-12		
2jikA	101	3.14e-12		
1n7eA	97	3.25e-12	b.36.1.1	91691
2awxA	105	3.32e-12		
2opgA	98	4.14e-12		
2jilA	97	4.54e-12		
2fe5A	94	5.48e-12	b.36.1.1	133323
2f5yA	91	6.70e-12	b.36.1.1	133015
1qauA	112	8.07e-12	b.36.1.1	24779
1q3oA	109	1.05e-11	b.36.1.1	95700
2q3gA	89	1.11e-11		
1wf7A	103	1.19e-11	b.36.1.1	114577
2gzvA	114	1.38e-11		
1qavA	90	1.57e-11	b.36.1.1	24777
2pktA	91	1.70e-11		
1v5lA	103	1.79e-11	b.36.1.1	108378
2iwoA	120	2.04e-11		
1kwaA	88	2.20e-11	b.36.1.1	24772
2qkvA	96	2.64e-11		
1l6oA	95	2.99e-11	b.36.1.1	84534
2fcfA	103	3.17e-11	b.36.1.1	133267
2f0aA	98	3.28e-11	b.36.1.1	132661
2h2bA	107	3.37e-11		
2pa1A	87	3.73e-11		
2egoA	96	5.14e-11		
2q9vA	90	5.47e-11		
2i04A	85	5.64e-11		
1x45A	98	6.70e-11	b.36.1.1	121679
1r6jA	82	6.75e-11	b.36.1.1	97151
1ihjA	98	7.24e-11	b.36.1.1	62382
1fc6A	388	1.01e-10	b.36.1.3,c.14.1.2	64738,64739
2uzcA	88	1.10e-10		
3bpuA	88	1.14e-10		
2vphA	100	1.58e-10		
2h3lA	103	2.07e-10	b.36.1.1	136046
2reyA	100	2.23e-10		
2rczA	81	2.29e-10		
1mfgA	95	8.75e-10	b.36.1.1	79043
1nf3C	128	1.86e-09	b.36.1.1	85596
2eaqA	90	3.60e-09		
1y8tA	324	5.62e-05	b.36.1.4,b.47.1.1	122763,122764
2p3wA	112	8.43e-05		
1lcyA	325	0.000416	b.36.1.4,b.47.1.1	73834,73835
1te0A	318	0.000815	b.36.1.4,b.47.1.1	112400,112401
2adzA	178	0.001239	b.55.1.1	126599
1sotA	320	0.002988	b.36.1.4,b.47.1.1	105852,105853
1k32A	1045	0.09464	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	1.312	c.14.1.2	66425
2p1zA	180	1.719		
2d5wA	603	2.766		
2i6vA	87	3.214		
1vchA	175	3.639	c.61.1.1	119980
2rgqA	144	3.877		
2g8mA	264	5.673		
1f28A	297	6.154	d.117.1.1	59608
1qqqA	264	6.300	d.117.1.1	40931
2g8oA	264	8.319	d.117.1.1	134779
1hvyA	288	8.355	d.117.1.1	41049
1evfA	264	9.759	d.117.1.1	40932
1ypvA	313	10.00		
1bkpA	278	10.17	d.117.1.1	41029
1g2qA	187	11.94	c.61.1.1	65117
2yzkA	178	14.94		
1ev5A	264	25.31	d.117.1.1	40935
2hcrA	326	29.00		
2yx0A	342	29.55		
1l5jA	865	31.31	a.118.15.1,c.8.2.1,c.83.1.1	73592,73593,73594
2q6kA	283	31.75		
2vefA	314	34.73		
1rqpA	299	35.62	b.141.1.1,c.132.1.1	97754,97755
1u9yA	284	36.97	c.61.1.2,c.61.1.2	119655,119656
1ha1	184	40.14		
2gebA	185	42.87		
1b5eA	246	45.63	d.117.1.1	41056
2yyhA	139	46.18		
2etjA	250	48.15	c.55.3.1	132360
2akaB	299	50.97	c.37.1.8	126914
1wd5A	208	51.91	c.61.1.1	114524
2ax4A	198	52.18		
2j3tD	219	54.16		
1qm9A	198	56.40	d.58.7.1,d.58.7.1	39207,39208
1aj2	282	56.52		
1dkuA	317	61.72	c.61.1.2,c.61.1.2	34118,34119
2pqmA	343	66.24		
2z81A	549	68.72		
1o4uA	285	69.94	c.1.17.1,d.41.2.1	86624,86625
2ps1A	226	70.74		
2j73A	103	71.13		
2nooA	502	71.27		
2f4nA	273	72.63		
2z2uA	311	78.81		
1vdmA	153	80.62	c.61.1.1	119994
2adcA	229	81.57	d.58.7.1,d.58.7.1	126582,126583
2d9iA	96	84.10		
1ir6A	424	84.51	c.107.1.2	71342
2aeeA	211	85.58	c.61.1.1	126620
2z1cA	75	88.30