# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2he2A	102	3.70e-13		
1g9oA	91	4.07e-13	b.36.1.1	60400
1tp5A	119	5.06e-13	b.36.1.1	119305
2ozfA	92	6.24e-13		
1be9A	119	6.63e-13	b.36.1.1	24774
2v90A	96	8.29e-13		
2he4A	90	1.02e-12		
2fneA	117	1.64e-12	b.36.1.1	133813
2qg1A	92	1.73e-12		
2i1nA	102	1.99e-12		
2ocsA	88	2.03e-12		
1n7eA	97	2.07e-12	b.36.1.1	91691
2awxA	105	2.80e-12		
2iwnA	97	2.86e-12		
2jilA	97	3.50e-12		
2fe5A	94	3.53e-12	b.36.1.1	133323
2opgA	98	3.76e-12		
2jikA	101	3.96e-12		
2f5yA	91	4.65e-12	b.36.1.1	133015
1qauA	112	6.15e-12	b.36.1.1	24779
1qavA	90	8.37e-12	b.36.1.1	24777
1kwaA	88	1.08e-11	b.36.1.1	24772
1wf7A	103	1.21e-11	b.36.1.1	114577
2gzvA	114	1.25e-11		
1v5lA	103	1.33e-11	b.36.1.1	108378
2q3gA	89	1.42e-11		
2pktA	91	1.51e-11		
2qkvA	96	1.86e-11		
2iwoA	120	2.10e-11		
1q3oA	109	2.25e-11	b.36.1.1	95700
2f0aA	98	2.59e-11	b.36.1.1	132661
2fcfA	103	2.84e-11	b.36.1.1	133267
2q9vA	90	2.92e-11		
1l6oA	95	3.49e-11	b.36.1.1	84534
1ihjA	98	3.70e-11	b.36.1.1	62382
2pa1A	87	3.85e-11		
2h2bA	107	4.16e-11		
2i04A	85	4.16e-11		
1r6jA	82	5.29e-11	b.36.1.1	97151
2egoA	96	7.26e-11		
2uzcA	88	8.28e-11		
1x45A	98	8.39e-11	b.36.1.1	121679
1fc6A	388	1.02e-10	b.36.1.3,c.14.1.2	64738,64739
3bpuA	88	1.25e-10		
2reyA	100	1.36e-10		
2vphA	100	1.62e-10		
2h3lA	103	2.17e-10	b.36.1.1	136046
2rczA	81	2.50e-10		
1mfgA	95	8.26e-10	b.36.1.1	79043
1nf3C	128	1.48e-09	b.36.1.1	85596
2eaqA	90	3.11e-09		
1y8tA	324	3.10e-05	b.36.1.4,b.47.1.1	122763,122764
2p3wA	112	4.00e-05		
1lcyA	325	0.000302	b.36.1.4,b.47.1.1	73834,73835
1te0A	318	0.000598	b.36.1.4,b.47.1.1	112400,112401
1sotA	320	0.000787	b.36.1.4,b.47.1.1	105852,105853
2adzA	178	0.003183	b.55.1.1	126599
1k32A	1045	0.06864	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.3959	c.14.1.2	66425
1vchA	175	1.381	c.61.1.1	119980
2p1zA	180	2.212		
2rgqA	144	2.948		
2d5wA	603	3.691		
2i6vA	87	4.230		
1qqqA	264	6.674	d.117.1.1	40931
1f28A	297	8.692	d.117.1.1	59608
1g2qA	187	9.873	c.61.1.1	65117
1hvyA	288	9.98	d.117.1.1	41049
1evfA	264	10.47	d.117.1.1	40932
2g8mA	264	11.05		
2g8oA	264	13.42	d.117.1.1	134779
1bkpA	278	15.27	d.117.1.1	41029
2yzkA	178	16.75		
1ypvA	313	18.15		
1ev5A	264	24.44	d.117.1.1	40935
2hcrA	326	25.24		
1ha1	184	25.71		
1dkuA	317	26.07	c.61.1.2,c.61.1.2	34118,34119
1l5jA	865	26.71	a.118.15.1,c.8.2.1,c.83.1.1	73592,73593,73594
2q6kA	283	29.73		
2btuA	346	29.84		
2z1cA	75	29.96		
1u9yA	284	31.69	c.61.1.2,c.61.1.2	119655,119656
1wd5A	208	36.91	c.61.1.1	114524
2ax4A	198	37.17		
2yx0A	342	38.79		
2j3tD	219	38.87		
1t71A	281	39.04	d.159.1.9	112283
1c9oA	66	43.49	b.40.4.5	25325
1bd3A	243	50.37	c.61.1.1	34098
2blnA	305	51.20	b.46.1.1,c.65.1.1	128734,128735
2adcA	229	51.22	d.58.7.1,d.58.7.1	126582,126583
2vefA	314	51.58		
2aeeA	211	55.25	c.61.1.1	126620
1s98A	107	58.53	b.124.1.1	105377
1l3kA	196	69.67	d.58.7.1,d.58.7.1	73539,73540
2hzcA	87	69.73		
1z2uA	150	71.50	d.20.1.1	124389
1l1qA	186	73.56	c.61.1.1	77653
1fsgA	233	76.69	c.61.1.1	34029
3bs5A	106	77.57		
2gebA	185	77.65		
1qm9A	198	78.02	d.58.7.1,d.58.7.1	39207,39208
2e3dA	302	80.12		
1o4uA	285	81.34	c.1.17.1,d.41.2.1	86624,86625
2d9iA	96	81.74		
1fxlA	167	82.38	d.58.7.1,d.58.7.1	39183,39184
1aj2	282	85.80		
1b5eA	246	87.62	d.117.1.1	41056