# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g9oA 91 2.23e-17 b.36.1.1 60400 2ozfA 92 3.72e-17 2v90A 96 6.75e-16 2qg1A 92 7.54e-16 2he4A 90 9.15e-16 2ocsA 88 1.09e-15 2opgA 98 2.12e-15 2gzvA 114 2.20e-15 2f5yA 91 3.61e-15 b.36.1.1 133015 2he2A 102 4.29e-15 1ihjA 98 4.78e-15 b.36.1.1 62382 2egoA 96 6.23e-15 1tp5A 119 6.58e-15 b.36.1.1 119305 2qkvA 96 6.77e-15 1qauA 112 6.84e-15 b.36.1.1 24779 2jilA 97 6.93e-15 2fe5A 94 7.04e-15 b.36.1.1 133323 2fneA 117 7.24e-15 b.36.1.1 133813 2i1nA 102 8.19e-15 1qavA 90 8.19e-15 b.36.1.1 24777 1n7eA 97 8.67e-15 b.36.1.1 91691 2iwnA 97 8.73e-15 1be9A 119 1.35e-14 b.36.1.1 24774 2q3gA 89 1.35e-14 2pktA 91 1.39e-14 2uzcA 88 1.43e-14 2jikA 101 1.68e-14 2fcfA 103 1.90e-14 b.36.1.1 133267 2awxA 105 2.44e-14 1mfgA 95 3.89e-14 b.36.1.1 79043 2h2bA 107 4.03e-14 3bpuA 88 6.42e-14 2q9vA 90 7.20e-14 1x45A 98 7.69e-14 b.36.1.1 121679 1q3oA 109 7.97e-14 b.36.1.1 95700 1l6oA 95 8.58e-14 b.36.1.1 84534 2reyA 100 1.07e-13 2h3lA 103 2.10e-13 b.36.1.1 136046 1kwaA 88 2.17e-13 b.36.1.1 24772 2pa1A 87 2.34e-13 2i04A 85 2.84e-13 2vphA 100 4.90e-13 2iwoA 120 7.33e-13 1wf7A 103 7.71e-13 b.36.1.1 114577 1r6jA 82 1.17e-12 b.36.1.1 97151 2f0aA 98 2.54e-12 b.36.1.1 132661 1nf3C 128 8.76e-12 b.36.1.1 85596 2eaqA 90 2.62e-11 1v5lA 103 1.43e-10 b.36.1.1 108378 2rczA 81 1.03e-08 1fc6A 388 1.53e-08 b.36.1.3,c.14.1.2 64738,64739 1y8tA 324 1.72e-06 b.36.1.4,b.47.1.1 122763,122764 2p3wA 112 1.05e-05 1te0A 318 0.000121 b.36.1.4,b.47.1.1 112400,112401 1lcyA 325 0.000399 b.36.1.4,b.47.1.1 73834,73835 2i6vA 87 0.000931 1k32A 1045 0.09856 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2j3tD 219 2.047 2btuA 346 9.98 2bw3A 534 11.37 a.270.1.1,c.55.3.12 129317,129318 1luzA 88 11.42 b.40.4.5 74271 1vs0A 310 11.88 1vj0A 380 11.94 b.35.1.2,c.2.1.1 100786,100787 1yqdA 366 15.20 2f9hA 129 16.51 b.161.1.1 133162 1x3mA 415 17.07 c.55.1.2,c.55.1.2 121664,121665 1f8fA 371 18.00 b.35.1.2,c.2.1.1 83246,83247 2ap1A 327 19.08 c.55.1.10,c.55.1.10 127108,127109 1f20A 435 20.47 b.43.4.1,c.25.1.4 64932,64933 1cjwA 166 21.22 d.108.1.1 40818 2h7aA 110 22.65 1a62A 130 23.19 a.140.3.1,b.40.4.5 64708,64709 2b3rA 134 23.28 1widA 130 24.56 b.142.1.2 114667 1u3wA 374 24.99 b.35.1.2,c.2.1.1 113013,113014 2dstA 131 26.20 2e1zA 415 26.48 1xk5A 204 26.66 2c5qA 240 27.31 1p0fA 373 27.44 b.35.1.2,c.2.1.1 87642,87643 3bdiA 207 28.44 1a62 130 29.29 2dxqA 150 29.74 2jhfA 374 30.21 b.35.1.2,c.2.1.1 138314,138315 1kqfA 1015 30.53 b.52.2.2,c.81.1.1 72871,72872 1l0cA 207 31.20 d.108.1.1 73393 1rypH 205 31.98 d.153.1.4 41876 2ei9A 240 34.10 1z4eA 153 34.21 d.108.1.1 124431 2i62A 265 34.49 2ejeA 114 34.96 1bebA 162 39.24 b.60.1.1 27115 2qguA 211 40.83 1vkcA 158 42.39 d.108.1.1 113663 1u94A 356 42.84 c.37.1.11,d.48.1.1 107743,107744 2oaaA 249 42.90 1bn7A 294 44.38 c.69.1.8 34677 1lci 550 45.18 1tllA 688 46.22 b.43.4.1,c.23.5.2,c.25.1.4 107128,107129,107130 2b4uA 335 46.65 1prtF 98 47.46 b.40.2.1 25140 1pneA 139 48.19 d.110.1.1 40866 2go9A 161 48.81 2pdoA 144 49.42 1um0A 365 49.94 d.258.1.1 107942 1s3zA 165 50.20 d.108.1.1 105250 1l3kA 196 53.09 d.58.7.1,d.58.7.1 73539,73540 1brwA 433 53.80 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1yb3A 175 54.37 d.296.1.2 122869 1ygsA 234 54.96 b.26.1.1 23907 1q60A 99 55.42 d.288.1.1 111654 1jqbA 351 57.20 b.35.1.2,c.2.1.1 77151,77152 1ckmA 330 58.61 b.40.4.6,d.142.2.3 25358,41585 1q0rA 298 59.10 c.69.1.28 95508 1yexA 186 59.94 c.47.1.10 123021 1ey4A 149 60.77 b.40.1.1 24815 2o38A 120 63.76 1stmA 157 67.45 b.121.7.1 23281 1kevA 351 70.00 b.35.1.2,c.2.1.1 24749,29765 2ouiA 360 70.59 1nu5A 370 70.95 c.1.11.2,d.54.1.1 92183,92184 2gs8A 317 71.14 1uch 230 71.80 1khiA 176 74.21 b.34.5.2,b.40.4.5 77408,77409 1pdkB 157 74.45 b.2.3.2 22427 1euhA 475 75.85 c.82.1.1 35369 2j58A 359 76.32 1vh0A 161 78.14 c.116.1.3 100626 2pavP 139 79.43 1rowA 109 79.50 b.1.11.2 97676 2cdqA 510 81.76 c.73.1.3,d.58.18.10,d.58.18.10 130290,130291,130292 2d8aA 348 81.80 2fl4A 149 82.38 d.108.1.1 133706 2f4iA 197 82.43 b.40.11.1 132923 2pbdP 139 82.69 1wv8A 73 82.98 d.304.1.1 121326 1uufA 369 83.06 b.35.1.2,c.2.1.1 100006,100007 1uz5A 402 86.03 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1d4xG 126 86.87 d.109.1.1 59109 1rsyA 152 87.37 b.7.1.2 23192 1y9aA 360 89.13