# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1g9oA 91 6.78e-18 1pdr b.36.1.1 60400 1i92A 91 9.46e-18 1pdr b.36.1.1 61990 2he2A 102 3.30e-17 2ozfA 92 5.71e-17 2he4A 90 1.11e-16 2ocsA 88 1.22e-16 2i1nA 102 1.82e-16 1pdr 99 3.17e-16 1pdr 2fneA 117 3.39e-16 b.36.1.1 133813 1tp5A 119 4.05e-16 b.36.1.1 119305 1be9A 119 6.45e-16 1pdr b.36.1.1 24774 2jikA 101 7.88e-16 2opgA 98 8.46e-16 2fe5A 94 1.30e-15 b.36.1.1 133323 2pktA 91 2.24e-15 2awxA 105 2.31e-15 2qg1A 92 3.27e-15 2jilA 97 6.16e-15 2fcfA 103 1.48e-14 b.36.1.1 133267 2iwnA 97 2.72e-14 2uzcA 88 6.96e-14 1n7eA 97 8.05e-14 b.36.1.1 91691 1q3oA 109 1.68e-13 b.36.1.1 95700 1qavA 90 1.98e-13 1qauA b.36.1.1 24777 1wf7A 103 2.34e-13 b.36.1.1 114577 1v5lA 103 2.51e-13 b.36.1.1 108378 2pa1A 87 4.70e-13 2f5yA 91 4.79e-13 b.36.1.1 133015 1ihjA 98 6.09e-13 1pdr b.36.1.1 62382 2egoA 96 8.77e-13 2iwoA 120 1.12e-12 2q3gA 89 1.33e-12 1mfgA 95 1.44e-12 b.36.1.1 79043 2q9vA 90 1.50e-12 2h2bA 107 1.73e-12 1m5zA 91 2.09e-12 b.36.1.1 78676 1qauA 112 2.10e-12 1qauA b.36.1.1 24779 2h3lA 103 2.47e-12 b.36.1.1 136046 1qavB 115 3.70e-12 1qauA b.36.1.1 24780 1b8qA 127 4.60e-12 1qauA b.36.1.1 24781 1l6oA 95 4.89e-12 b.36.1.1 84534 2i04A 85 1.25e-11 2f0aA 98 1.67e-11 b.36.1.1 132661 3bpuA 88 2.39e-11 2gzvA 114 3.23e-11 1x45A 98 5.66e-11 b.36.1.1 121679 2eaqA 90 6.21e-11 1nf3C 128 7.35e-11 b.36.1.1 85596 2vphA 100 7.69e-11 2reyA 100 9.51e-11 1kwaA 88 1.34e-10 1kwaA b.36.1.1 24772 2qkvA 96 2.38e-09 2p3wA 112 3.70e-09 1r6jA 82 1.15e-08 b.36.1.1 97151 2rczA 81 7.49e-08 1lcyA 325 8.06e-08 b.36.1.4,b.47.1.1 73834,73835 1fc6A 388 1.08e-07 1fc6A b.36.1.3,c.14.1.2 64738,64739 1te0A 318 2.52e-07 b.36.1.4,b.47.1.1 112400,112401 1ky9A 448 3.69e-07 b.36.1.4,b.47.1.1 73198,73199 1sotA 320 1.64e-06 b.36.1.4,b.47.1.1 105852,105853 1y8tA 324 1.95e-04 b.36.1.4,b.47.1.1 122763,122764 2j3tD 219 1.99e-03 2i6vA 87 8.31e-02 2bh4X 134 1.07e-01 1db3A 372 1.10e-01 1db3A c.2.1.2 29813 2bonA 332 7.31e-01 1bx4A 345 8.60e-01 1bx4A c.72.1.1 34935 1ah1 129 1.17e+00 1ah1 1koe 172 1.35e+00 1koe 1koeA 172 1.35e+00 d.169.1.5 42448 1kw4A 89 2.17e+00 a.60.1.2 73077 2oqrA 230 2.36e+00 1pueE 89 2.37e+00 1awcA a.4.5.21 16165 1xebA 150 2.71e+00 d.108.1.1 115219 1p99A 295 2.87e+00 c.94.1.1 94384 2ywvA 244 3.17e+00 2hhgA 139 3.66e+00 3bs5B 80 3.68e+00 2ogtA 498 4.00e+00 2hc1A 291 4.95e+00 2g17A 337 5.17e+00 c.2.1.3,d.81.1.1 134512,134513 1jhfA 202 5.53e+00 a.4.5.2,b.87.1.1 63057,63058 1qw2A 102 6.31e+00 d.249.1.1 96456 1i8lC 126 6.53e+00 1ah1 b.1.1.1 61974 1rypL 212 6.83e+00 d.153.1.4 41880 1r13A 148 6.86e+00 d.169.1.1,h.1.1.1 96782,96783 1rm6A 769 6.95e+00 d.41.1.1,d.133.1.1 111872,111873 1g65K 211 7.08e+00 d.153.1.4 41907 1xwsA 313 8.00e+00 d.144.1.7 116133 2b3oA 532 8.65e+00 1se8A 301 8.90e+00 b.40.4.3 105448 2bikB 313 8.94e+00 2qf4A 172 9.07e+00 2gwnA 452 9.21e+00 2hwvA 121 1.02e+01 1t6t1 118 1.05e+01 1ti6A 875 1.09e+01 b.52.2.2,c.81.1.1 106974,106975 1z1dA 103 1.17e+01 a.4.5.16 124351 1z6nA 167 1.19e+01 c.47.1.1 124530 1dxrH 258 1.26e+01 6prcH b.41.1.1,f.23.10.1 25456,43433 1dpuA 99 1.29e+01 1dpuA a.4.5.16 16150 1p35A 299 1.40e+01 1p35A b.28.1.1 23925 1rurH 218 1.41e+01 b.1.1.1,b.1.1.2 97879,97880 1nvmA 345 1.45e+01 a.5.7.1,c.1.10.5 86249,86250 3b2nA 133 1.55e+01 1v9dA 340 1.57e+01 a.207.1.1 100535 1b7fA 168 1.58e+01 1b7fA d.58.7.1,d.58.7.1 39169,39170 1dj8A 89 1.61e+01 1bg8A a.57.1.1 17919 2v03A 303 1.61e+01 1pk1B 89 1.64e+01 a.60.1.2 118712 2i5nH 258 1.66e+01 b.41.1.1,f.23.10.1 137064,137065 1mo1A 87 1.71e+01 d.94.1.1 91363 35c8H 217 1.75e+01 8fabA b.1.1.1,b.1.1.2 20297,21289 3sxlA 184 1.75e+01 1b7fA d.58.7.1,d.58.7.1 39173,39174 2plnA 137 1.81e+01 1sw2A 275 1.96e+01 c.94.1.1 106064 2hjnA 236 2.11e+01 2aqwA 332 2.14e+01 c.1.2.3 127184 3bedA 142 2.15e+01 2cc0A 195 2.16e+01 c.6.2.3 130209 2oxgA 108 2.16e+01 1lnzA 342 2.17e+01 b.117.1.1,c.37.1.8 78112,78113 2d1vA 108 2.18e+01 3colA 196 2.19e+01 2qrdA 137 2.24e+01 1qo0D 196 2.27e+01 1qo0D c.23.1.3 31125 1tz9A 367 2.46e+01 c.1.15.6 107466 1ql3A 99 2.46e+01 1ycc a.3.1.1 15822 1yrlA 491 2.50e+01 2dgdA 223 2.51e+01 1ialA 453 2.61e+01 1bk5A a.118.1.1 19116 1x84A 189 2.64e+01 d.113.1.2 121795 1qwjA 229 2.70e+01 c.68.1.13 96478 1csp 67 2.77e+01 1mjc 2bazA 142 2.92e+01 1vpqA 273 2.93e+01 c.1.32.1 113974 2r6fA 972 2.93e+01 1l1dA 152 2.93e+01 b.88.1.3 73452 1uw0A 117 2.96e+01 g.39.1.12 108063 1wj6A 101 2.97e+01 d.15.2.2 114693 1tyyA 339 2.97e+01 c.72.1.1 112850 2ostA 151 2.99e+01 2dq6A 870 3.01e+01 1cei 94 3.08e+01 1cei 1hztA 190 3.10e+01 1i9aA d.113.1.2 61459 2z80A 353 3.18e+01 1xocA 520 3.22e+01 c.94.1.1 122201 1zhvA 134 3.25e+01 d.58.18.8,d.58.18.8 125109,125110 1i9aA 182 3.27e+01 1i9aA d.113.1.2 62082 2ix2B 245 3.42e+01 1t3qB 788 3.44e+01 d.41.1.1,d.133.1.1 106369,106370 2j3wA 142 3.49e+01 d.110.4.3 137981 2gn4A 344 3.56e+01 2qe6A 274 3.57e+01 1skyB 502 3.59e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 18313,26478,32358 1duxC 94 3.62e+01 1awcA a.4.5.21 16170 1jjtA 228 3.72e+01 1a7tA d.157.1.1 63139 1rm6B 324 3.72e+01 d.87.2.1,d.145.1.3 111874,111875 1wi9A 72 3.75e+01 a.4.5.47 114663 1unkA 87 3.77e+01 1cei a.28.2.1 16935 2vprA 207 3.85e+01 1vs0A 310 3.92e+01 1qf8A 182 3.97e+01 1qf8A g.41.4.1 45212 2hgcA 102 4.03e+01 1d6tA 117 4.03e+01 1a6f d.14.1.2 37565 2iacA 142 4.16e+01 2nn6H 308 4.21e+01 1lqyA 184 4.26e+01 d.167.1.1 74212 1yloA 348 4.32e+01 b.49.3.1,c.56.5.4 123659,123660 1qapA 296 4.36e+01 1qpoA c.1.17.1,d.41.2.1 29559,38595 1viuA 203 4.45e+01 d.113.1.1 100771 2r15A 212 4.49e+01 1sw5A 275 4.51e+01 c.94.1.1 106069 1a8y 367 4.61e+01 1a8y 1a8yA 367 4.61e+01 c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1afvH 220 4.62e+01 1mfa b.1.1.1,b.1.1.2 20131,21161 1bxeA 113 4.71e+01 1bxeA d.55.1.1 38898 1wveC 80 4.80e+01 a.3.1.1 121335 3biqA 467 4.88e+01 2i10A 202 4.91e+01 a.4.1.9,a.121.1.1 136960,136961 1ae6H 218 4.94e+01 1igtB b.1.1.1,b.1.1.2 20211,21223 1a79A 171 5.02e+01 1a79A c.52.2.1,d.75.1.1 33340,39739 2iyeA 263 5.03e+01 2e85A 159 5.05e+01 1nlbH 218 5.14e+01 b.1.1.1,b.1.1.2 80621,80622 1nwaA 203 5.18e+01 d.58.28.1 86295 1fxrA 64 5.19e+01 1fxd d.58.1.4 38993 2ajuH 219 5.23e+01 1jwoA 97 5.32e+01 d.93.1.1 63310 1e6oH 219 5.38e+01 1igtB b.1.1.1,b.1.1.2 20495,21453 6paxA 133 5.43e+01 6paxA a.4.1.5,a.4.1.5 64758,64759 1ju5A 109 5.43e+01 d.93.1.1 77173 1k0rA 366 5.49e+01 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 67961,67962,67963,67964 1r6xA 395 5.57e+01 b.122.1.3,c.26.1.5 97167,97168 2o62A 270 5.61e+01 1hvyA 288 5.64e+01 1bkpA d.117.1.1 41049 1yhuB 144 5.70e+01 2yqyA 169 5.74e+01 1a6f 119 5.82e+01 1a6f 1coaI 64 5.84e+01 2sniI d.40.1.1 38574 1dixA 208 5.89e+01 1bk7A d.124.1.1 41122 1mexH 215 5.92e+01 b.1.1.1,b.1.1.2 91257,91258 1reqB 637 5.95e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 2a77H 222 5.95e+01 b.1.1.2 126328 1y96A 86 5.98e+01 1um0A 365 6.02e+01 d.258.1.1 107942 2p0iA 456 6.04e+01 3c2cA 112 6.15e+01 a.3.1.1 15885 1vetA 124 6.15e+01 d.110.7.1 108553 2brfA 110 6.21e+01 b.26.1.2 128996 2b4aA 138 6.24e+01 c.23.1.1 127817 1vmeA 410 6.34e+01 c.23.5.1,d.157.1.3 108893,108894 1yjmA 110 6.38e+01 b.26.1.2 123427 1xdyA 298 6.46e+01 d.176.1.1 115186 2hiyA 183 6.47e+01 1f3zA 161 6.54e+01 b.84.3.1 28273 1axtL 216 6.61e+01 8fabA b.1.1.1,b.1.1.2 20304,21296 1yqsA 349 6.79e+01 e.3.1.1 123899 1sdeA 347 6.92e+01 e.3.1.1 112073 1ai1H 221 7.03e+01 1igtB b.1.1.1,b.1.1.2 19883,20979 1pwgA 349 7.03e+01 e.3.1.1 104340 1qhlA 227 7.14e+01 1qhlA c.37.1.12 32382 1rrmA 386 7.22e+01 e.22.1.2 105081 2o8bB 1022 7.37e+01 1a22A 180 7.43e+01 1huw a.26.1.1 16833 1sffA 426 7.58e+01 c.67.1.4 105482 1wmiA 90 7.66e+01 d.298.1.2 121045 1uzcA 71 7.66e+01 a.159.2.1 100222 1xbfA 140 7.67e+01 d.273.1.1 109538 1a5fH 217 7.68e+01 1igtB b.1.1.1,b.1.1.2 20303,21295 2nr3A 183 7.68e+01 2bwbA 46 7.69e+01 a.5.2.1 129329 1vl5A 260 7.70e+01 c.66.1.41 108720 1kdkA 177 7.75e+01 b.29.1.4 72351 1z3eA 132 7.87e+01 c.47.1.12 124400 1diiC 80 7.94e+01 1diiC a.3.1.1 15925 1mfaH 120 7.98e+01 b.1.1.1 19889 3bz6A 183 7.98e+01