# List of top-scoring protein chains for T0387.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.soe.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
2he2A	102	2.09e-14			
1um7A	113	4.24e-14		b.36.1.1	99579
1rgrA	99	1.34e-13		b.36.1.1	104931
2dkrA	93	1.45e-13			
1gq5A	91	1.69e-13		b.36.1.1	76274
1g9oA	91	1.86e-13	1pdr	b.36.1.1	60400
1kefA	93	1.96e-13		b.36.1.1	72369
1i92A	91	1.98e-13	1pdr	b.36.1.1	61990
1gq4A	90	2.15e-13		b.36.1.1	70340
2i1nA	102	2.20e-13			
1tp5A	119	2.26e-13		b.36.1.1	119305
1be9A	119	2.43e-13	1pdr	b.36.1.1	24774
1iu0A	91	2.43e-13		b.36.1.1	83707
1pdrA	99	2.50e-13		b.36.1.1	24771
1zokA	93	3.18e-13		b.36.1.1	125451
2enoA	120	4.23e-13			
2jikA	101	4.96e-13			
2awxA	105	5.23e-13			
2bygA	117	5.37e-13		b.36.1.1	129480
2jinA	102	5.52e-13			
2he4A	90	5.90e-13			
2i0iA	85	6.58e-13		b.36.1.1	136953
2r4hA	112	6.86e-13			
2ocsA	88	7.19e-13			
2g2lA	105	7.51e-13			
2dm8A	116	7.52e-13			
2awuA	105	8.75e-13			
2fe5A	94	8.81e-13		b.36.1.1	133323
2awwA	105	8.86e-13			
2ozfA	92	9.19e-13			
1wfvA	103	9.96e-13		b.36.1.1	114594
2fneA	117	1.25e-12		b.36.1.1	133813
2oqsA	97	1.32e-12			
1d5gA	96	1.76e-12		b.36.1.1	70080
1qlcA	95	2.39e-12	1qauA	b.36.1.1	24776
1gm1A	94	2.66e-12		b.36.1.1	70271
1vj6A	102	2.71e-12		b.36.1.1	120064
2d90A	102	2.72e-12			
1x5qA	110	3.03e-12		b.36.1.1	121717
2jilA	97	3.05e-12			
2fcfA	103	3.55e-12		b.36.1.1	133267
2opgA	98	3.69e-12			
2iwqA	123	4.00e-12			
2dc2A	103	4.37e-12			
2qg1A	92	4.88e-12			
1whaA	105	5.28e-12		b.36.1.1	114638
1uhpA	107	7.98e-12		b.36.1.1	99400
1wf8A	107	1.02e-11		b.36.1.1	120967
2eeiA	106	1.08e-11			
2djtA	104	1.19e-11			
2i0lA	84	1.30e-11			
2dazA	124	1.34e-11			
1uezA	101	1.43e-11		b.36.1.1	99286
2dluA	111	1.48e-11			
2vrfA	95	1.81e-11			
1z87A	263	1.85e-11			
2fn5A	94	1.95e-11			
2eejA	96	1.96e-11			
1qavA	90	2.01e-11	1qauA	b.36.1.1	24777
2pktA	91	2.31e-11			
2ogpA	97	2.59e-11			
2g5mB	113	2.99e-11			
1z86A	87	3.10e-11		b.36.1.1	124690
2pdzA	86	3.21e-11	1pdr	b.36.1.1	24778
1q7xA	108	3.34e-11		b.36.1.1	96059
2v90A	96	3.90e-11			
1uewA	114	4.02e-11		b.36.1.1	99281
1um1A	110	4.17e-11		b.36.1.1	99578
1uf1A	128	4.19e-11		b.36.1.1	99288
2ehrA	117	4.76e-11			
2iwoA	120	5.47e-11			
2dmzA	129	6.08e-11			
1wi2A	104	6.25e-11		b.36.1.1	114659
1oziA	99	6.54e-11		b.36.1.1	93845
2edzA	114	7.12e-11			
1ueqA	123	7.55e-11		b.36.1.1	99271
2iwnA	97	8.92e-11			
2o2tA	117	1.01e-10			
2v1wA	90	1.29e-10			
1ujuA	111	1.43e-10		b.36.1.1	99469
2csjA	117	1.79e-10		b.36.1.1	130771
2yuyA	126	1.86e-10			
2q9vA	90	2.06e-10			
1v5lA	103	2.16e-10		b.36.1.1	108378
2omjA	89	2.23e-10			
2eegA	94	2.49e-10			
1t2mA	101	2.71e-10		b.36.1.1	119133
1n7eA	97	2.82e-10		b.36.1.1	91691
2d92A	108	2.97e-10			
1vb7A	94	3.25e-10		b.36.1.1	108474
1q3oA	109	3.26e-10		b.36.1.1	95700
1xz9A	101	3.65e-10		b.36.1.1	122471
1uepA	103	3.73e-10		b.36.1.1	99270
2ainA	93	4.09e-10			
2uzcA	88	5.10e-10			
2pa1A	87	5.43e-10			
2eehA	100	5.92e-10			
1m5zA	91	6.11e-10		b.36.1.1	78676
2q3gA	89	6.22e-10			
1rgwA	85	6.94e-10		b.36.1.1	97455
1ihjA	98	7.02e-10	1pdr	b.36.1.1	62382
1wjlA	90	7.71e-10		b.36.1.1	114701
1wf7A	103	8.06e-10		b.36.1.1	114577
2db5A	128	9.18e-10			
2h2cA	107	1.01e-09			
2h2bA	107	1.01e-09			
1uitA	117	1.02e-09		b.36.1.1	99433
2f5yA	91	1.08e-09		b.36.1.1	133015
1x5nA	114	1.13e-09		b.36.1.1	121714
1qavB	115	1.14e-09	1qauA	b.36.1.1	24780
1b8qA	127	1.17e-09	1qauA	b.36.1.1	24781
3b76A	118	1.31e-09			
2dlsA	93	1.40e-09			
2h3mA	97	1.48e-09			
1qauA	112	1.63e-09	1qauA	b.36.1.1	24779
1x6dA	119	2.13e-09		b.36.1.2	121739
1wg6A	127	2.45e-09		b.36.1.1	114603
3bpuA	88	2.48e-09			
1whdA	100	2.48e-09		b.36.1.1	114641
1mfgA	95	2.49e-09		b.36.1.1	79043
2reyA	100	2.82e-09			
2h3lA	103	2.83e-09		b.36.1.1	136046
2i04A	85	3.05e-09			
2f0aA	98	3.60e-09		b.36.1.1	132661
1l6oA	95	4.09e-09		b.36.1.1	84534
2egkA	101	4.52e-09			
1mc7A	95	5.21e-09		b.36.1.1	91241
2qbwA	195	5.23e-09			
1i16A	130	5.28e-09		b.36.1.2	24787
2egoA	96	5.60e-09			
1x8sA	102	6.43e-09		b.36.1.1	114967
1x5rA	112	6.46e-09		b.36.1.1	121718
1v62A	117	6.81e-09		b.36.1.1	108390
1rzxA	98	7.25e-09		b.36.1.1	98236
2pntA	98	7.49e-09			
1ry4A	128	7.51e-09		b.36.1.1	98085
1w9eA	166	8.39e-09		b.36.1.1,b.36.1.1	120779,120780
1p1dA	196	8.46e-09		b.36.1.1,b.36.1.1	93896,93897
2cs5A	119	9.23e-09		b.36.1.1	130747
2vphA	100	1.10e-08			
2jweA	88	1.13e-08			
1wh1A	124	1.33e-08		b.36.1.1	114629
2rczA	81	1.43e-08			
1ujvA	96	2.17e-08		b.36.1.1	99470
1wi4A	109	2.26e-08		b.36.1.1	120973
1v5qA	122	2.42e-08		b.36.1.1	108383
2osgA	83	2.63e-08			
1p1eA	101	3.07e-08		b.36.1.1	93898
1nf3C	128	3.49e-08		b.36.1.1	85596
1va8A	113	5.91e-08		b.36.1.1	119903
1ujdA	117	7.25e-08		b.36.1.1	99454
2ev8A	97	9.50e-08			
2gzvA	114	1.12e-07			
2pkuA	87	1.23e-07			
2ejyA	97	1.36e-07			
2cssA	121	1.51e-07		b.36.1.1	130780
1kwaA	88	1.61e-07	1kwaA	b.36.1.1	24772
2edpA	100	1.77e-07			
2edvA	96	2.26e-07			
1wfgA	131	2.47e-07		b.36.1.1	114581
1vaeA	111	2.62e-07		b.36.1.1	108466
1u3bA	185	2.96e-07		b.36.1.1,b.36.1.1	119508,119509
1v6bA	118	3.63e-07		b.36.1.1	108394
1zubA	114	4.19e-07		b.36.1.1	125665
1y7nA	90	4.42e-07		b.36.1.1	122700
1u39A	80	4.83e-07		b.36.1.1	119503
2qktA	90	5.16e-07			
2yt8A	94	8.35e-07			
1u37A	89	8.50e-07		b.36.1.1	119501
1x45A	98	8.75e-07		b.36.1.1	121679
1ufxA	103	8.80e-07		b.36.1.1	99359
2yt7A	101	8.92e-07			
2qkvA	96	9.42e-07			
1wifA	126	2.36e-06		b.36.1.1	114669
1r6jA	82	2.61e-06		b.36.1.1	97151
1obxA	79	4.84e-06		b.36.1.1	86783
2e7kA	91	8.18e-06			
2eaqA	90	1.20e-05			
2d8iA	114	1.89e-05			
2yubA	118	4.53e-05			
2ytwA	118	8.41e-05			
2joaA	105	8.73e-05			
2p3wA	112	1.65e-04			
2pzdA	113	2.15e-04			
1fc6A	388	7.41e-04	1fc6A	b.36.1.3,c.14.1.2	64738,64739
1fc9A	388	1.07e-03	1fc6A	b.36.1.3,c.14.1.2	64742,64743
1lcyA	325	1.85e-03		b.36.1.4,b.47.1.1	73834,73835
1ky9A	448	3.66e-03		b.36.1.4,b.47.1.1	73198,73199
1te0A	318	7.71e-03		b.36.1.4,b.47.1.1	112400,112401
1sotA	320	7.75e-03		b.36.1.4,b.47.1.1	105852,105853
1sozA	314	7.80e-03		b.36.1.4,b.47.1.1	105859,105860
1y8tA	324	5.41e-02		b.36.1.4,b.47.1.1	122763,122764
2hgaA	125	6.05e-02			
2dy0A	190	1.32e+00			
2bh4X	134	2.21e+00			
2bgvX	134	2.28e+00			
1zn8A	180	3.58e+00		c.61.1.1	125376
2plnA	137	3.82e+00			
1mzvA	235	3.95e+00		c.61.1.1	91502
1x6vA	630	5.23e+00		b.122.1.3,c.26.1.5,c.37.1.4	121755,121756,121757
1qb7A	236	5.25e+00	1qb7A	c.61.1.1	34087
1cotA	129	5.74e+00		a.3.1.1	15899
1lnzA	342	5.74e+00		b.117.1.1,c.37.1.8	78112,78113
2hqoA	123	5.99e+00			
1ao0A	459	7.40e+00	1ecfB	c.61.1.1,d.153.1.1	34049,41816
1gph1	465	7.48e+00	1ecfB		
1hvyA	288	7.94e+00	1bkpA	d.117.1.1	41049
1mkmA	249	7.98e+00		a.4.5.33,d.110.2.2	79242,79243
1hzwA	290	8.01e+00	1bkpA	d.117.1.1	61464
1hw3A	313	8.14e+00	1bkpA	d.117.1.1	41053
1ju6A	313	8.25e+00		d.117.1.1	63289
1ypvA	313	8.33e+00			
1hw4A	355	8.57e+00	1bkpA	d.117.1.1	41054
155cA	134	8.66e+00		a.3.1.1	15900
2j3tD	219	9.19e+00			
2hqrA	223	1.02e+01			
2i6vA	87	1.03e+01			
2p0lA	288	1.18e+01			
2ps1A	226	1.19e+01			
1e6vC	258	1.25e+01	1mroC	d.58.31.1	39439
2tsrA	307	1.32e+01	1bkpA	d.117.1.1	41043
1sw2A	275	1.37e+01		c.94.1.1	106064
1sw5A	275	1.37e+01		c.94.1.1	106069
2i4sA	105	1.41e+01			
1f28A	297	1.78e+01	1bkpA	d.117.1.1	59608
1xe0A	114	1.82e+01		b.121.3.1	115197
1db3A	372	1.86e+01	1db3A	c.2.1.2	29813
2h2qA	521	1.86e+01			
1tisA	286	2.03e+01		d.117.1.1	41040
2qkmB	266	2.50e+01			
2a6tA	271	2.53e+01		a.242.1.1,d.113.1.7	126309,126310
1wkvA	389	2.56e+01		c.79.1.1	120989
1bx4A	345	2.69e+01	1bx4A	c.72.1.1	34935
2o8bB	1022	3.03e+01			
3colA	196	3.57e+01			
2d7uA	339	3.58e+01			
2i5mX	67	3.60e+01			
2o01G	95	3.67e+01			
1d7aA	161	3.68e+01	1qczA	c.23.8.1	31277
2nm0A	253	3.72e+01			
1vl8A	267	3.72e+01		c.2.1.2	108733
2uz1A	563	3.72e+01			
2nslA	169	3.72e+01			
2uz1B	563	3.73e+01			
1qczA	169	3.75e+01	1qczA	c.23.8.1	31276
2es2A	67	3.86e+01		b.40.4.5	132309
2nshA	169	3.87e+01			
2i5lX	67	4.08e+01			
1vpqA	273	4.08e+01		c.1.32.1	113974
2oqyA	391	4.10e+01			
2dgpA	106	4.23e+01			
1m3uA	264	4.56e+01		c.1.12.8	84784
2c61A	469	4.76e+01			
1t3qB	788	5.08e+01		d.41.1.1,d.133.1.1	106369,106370
2cucA	70	5.09e+01			
2hc1A	291	5.43e+01			
2dydA	85	5.51e+01			
1q1pA	212	5.53e+01		b.1.6.1,b.1.6.1	95597,95598
2pv7A	298	5.54e+01			
1dmsA	781	5.60e+01		b.52.2.2,c.81.1.1	26906,35314
2rghA	571	5.62e+01			
1ff5A	219	5.69e+01	1edhA	b.1.6.1,b.1.6.1	22202,22203
1qoxA	449	5.77e+01		c.1.8.4	28965
1edhA	226	5.81e+01	1edhA	b.1.6.1,b.1.6.1	22198,22199
1jmgA	316	5.90e+01		d.117.1.1	41008
2ahsA	295	6.23e+01			
1m54A	363	6.23e+01		c.79.1.1	74463
1bvwA	360	6.25e+01	1bvwA	c.6.1.1	30668
1gr0A	367	6.28e+01		c.2.1.3,d.81.1.3	70379,70380
1gz1A	362	6.29e+01		c.6.1.1	76405
1ocjA	362	6.29e+01		c.6.1.1	86801
2bvwA	362	6.29e+01	1bvwA	c.6.1.1	30666
1oc7A	364	6.30e+01		c.6.1.1	86794
1rlyA	60	6.39e+01		g.41.3.1	104988
1dl6A	58	6.43e+01	1dl6A	g.41.3.1	45207
2i4gA	313	6.45e+01			
2o38A	120	6.53e+01			
2g7gA	213	6.54e+01		a.4.1.9,a.121.1.1	134732,134733
1rlwA	126	6.56e+01		b.7.1.1	23177
3biiE	149	6.79e+01			
1fm0E	150	6.80e+01	1fmaE	d.41.5.1	38629
1hkvA	453	6.80e+01		b.49.2.3,c.1.6.1	83559,83560
1wscA	230	6.81e+01		d.309.1.1	121227
1nvjA	140	6.82e+01		d.41.5.1	86243
1jbqA	435	6.91e+01	1oasA	c.79.1.1	62850
1bciA	138	6.94e+01		b.7.1.1	23180
2v3wA	528	6.97e+01			
1ss3A	50	6.99e+01		g.2.3.1	105975
1yzxA	226	7.07e+01			
2hjgA	436	7.35e+01			
2o0tA	467	7.35e+01			
1z60A	59	7.46e+01			
1q6zA	528	7.71e+01		c.31.1.3,c.36.1.5,c.36.1.9	111655,111656,111657
1ynoA	527	7.73e+01		c.31.1.3,c.36.1.5,c.36.1.9	123747,123748,123749
1pi3A	528	7.73e+01		c.31.1.3,c.36.1.5,c.36.1.9	111633,111634,111635
2fn3A	528	7.73e+01		c.31.1.3,c.36.1.5,c.36.1.9	133803,133804,133805
2fwnA	528	7.75e+01		c.31.1.3,c.36.1.5,c.36.1.9	134249,134250,134251
1jalA	363	7.91e+01		c.37.1.8,d.15.10.2	84138,84139
2faoA	309	7.92e+01