# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1g9oA 91 1.06e-16 1pdr b.36.1.1 60400 2he2A 102 1.35e-16 2ozfA 92 3.87e-16 2he4A 90 4.69e-16 2i1nA 102 7.73e-16 2jikA 101 8.60e-16 2ocsA 88 1.05e-15 2opgA 98 1.13e-15 2awxA 105 1.16e-15 1tp5A 119 1.26e-15 b.36.1.1 119305 2fe5A 94 1.33e-15 b.36.1.1 133323 1be9A 119 1.37e-15 1pdr b.36.1.1 24774 2fcfA 103 2.61e-15 b.36.1.1 133267 2qg1A 92 3.65e-15 2jilA 97 9.74e-15 2v90A 96 1.40e-14 2fneA 117 3.65e-14 b.36.1.1 133813 1qavA 90 5.13e-14 1qauA b.36.1.1 24777 2pktA 91 8.81e-14 2iwnA 97 8.92e-14 1q3oA 109 2.70e-13 b.36.1.1 95700 1n7eA 97 4.00e-13 b.36.1.1 91691 2egoA 96 4.79e-13 2uzcA 88 9.05e-13 2q9vA 90 1.09e-12 1wf7A 103 1.28e-12 b.36.1.1 114577 2h2bA 107 1.45e-12 2pa1A 87 1.70e-12 2f5yA 91 1.71e-12 b.36.1.1 133015 2iwoA 120 1.77e-12 2f0aA 98 2.43e-12 b.36.1.1 132661 1l6oA 95 2.59e-12 b.36.1.1 84534 2q3gA 89 2.85e-12 3bpuA 88 2.98e-12 2reyA 100 3.29e-12 1ihjA 98 3.83e-12 1pdr b.36.1.1 62382 2i04A 85 3.94e-12 1v5lA 103 1.11e-11 b.36.1.1 108378 2vphA 100 1.14e-11 2h3lA 103 1.21e-11 b.36.1.1 136046 1mfgA 95 1.94e-11 b.36.1.1 79043 1qauA 112 2.35e-11 1qauA b.36.1.1 24779 1nf3C 128 2.76e-11 b.36.1.1 85596 2gzvA 114 8.83e-11 2qkvA 96 1.03e-10 1x45A 98 1.18e-10 b.36.1.1 121679 1kwaA 88 1.21e-10 1kwaA b.36.1.1 24772 1r6jA 82 1.75e-10 b.36.1.1 97151 2rczA 81 4.24e-09 2eaqA 90 1.13e-08 1fc6A 388 1.31e-06 1fc6A b.36.1.3,c.14.1.2 64738,64739 2p3wA 112 1.39e-05 1lcyA 325 7.74e-05 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 4.63e-04 b.36.1.4,b.47.1.1 112400,112401 2i6vA 87 1.17e-03 1y8tA 324 2.92e-03 b.36.1.4,b.47.1.1 122763,122764 1zn8A 180 2.16e-02 c.61.1.1 125376 1sotA 320 5.61e-02 b.36.1.4,b.47.1.1 105852,105853 2dy0A 190 8.19e-02 1fxlA 167 1.69e-01 1b7fA d.58.7.1,d.58.7.1 39183,39184 2ps1A 226 3.23e-01 1qb7A 236 4.91e-01 1qb7A c.61.1.1 34087 2e1zA 415 6.27e-01 2g8oA 264 6.43e-01 d.117.1.1 134779 1qqqA 264 6.56e-01 1bkpA d.117.1.1 40931 1x3mA 415 6.71e-01 c.55.1.2,c.55.1.2 121664,121665 2g8mA 264 6.74e-01 1evfA 264 6.76e-01 1bkpA d.117.1.1 40932 1g2qA 187 1.31e+00 c.61.1.1 65117 2dyoA 297 1.62e+00 2j3tD 219 1.69e+00 2bw3A 534 1.76e+00 a.270.1.1,c.55.3.12 129317,129318 1ev5A 264 1.92e+00 1bkpA d.117.1.1 40935 1xx6A 191 1.92e+00 c.37.1.24,g.39.1.14 116139,116140 1fwkA 296 2.25e+00 1fwkA d.14.1.5,d.58.26.1 37576,39398 1hvyA 288 2.40e+00 1bkpA d.117.1.1 41049 2hjgA 436 2.96e+00 1fsgA 233 2.98e+00 1qk3A c.61.1.1 34029 3b59A 310 3.15e+00 1w30A 201 3.22e+00 c.61.1.1 114118 1l1qA 186 3.36e+00 c.61.1.1 77653 1cliA 345 4.16e+00 1cliA d.79.4.1,d.139.1.1 39816,41459 1vdmA 153 4.46e+00 c.61.1.1 119994 1bx4A 345 4.78e+00 1bx4A c.72.1.1 34935 1h3gA 601 5.00e+00 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 2vbuA 136 5.01e+00 2gwnA 452 5.19e+00 2p1zA 180 5.97e+00 2btuA 346 6.17e+00 1h72C 296 6.45e+00 d.14.1.5,d.58.26.1 60712,60713 2oynA 146 6.65e+00 1ypvA 313 7.40e+00 1q52A 314 7.52e+00 c.14.1.3 95846 1un8A 552 7.68e+00 c.119.1.2,a.208.1.1 103806,99661 1fjrA 195 7.81e+00 1fjrA b.102.1.1 59855 2bnjA 303 8.07e+00 c.1.8.3 128832 1rypB 250 8.51e+00 1rypB d.153.1.4 41933 1r13A 148 9.08e+00 d.169.1.1,h.1.1.1 96782,96783 1cjbA 231 9.14e+00 1qk3A c.61.1.1 34079 2ix2B 245 9.27e+00 2rdqA 288 9.28e+00 1vchA 175 1.02e+01 c.61.1.1 119980 1i1wA 303 1.08e+01 c.1.8.3 76732 2cwaA 263 1.09e+01 1vpqA 273 1.11e+01 c.1.32.1 113974 2deoA 230 1.16e+01 1zm8A 259 1.18e+01 1opr 213 1.22e+01 1opr 2dykA 161 1.26e+01 1t6t1 118 1.29e+01 1db3A 372 1.29e+01 1db3A c.2.1.2 29813 1o57A 291 1.33e+01 a.4.5.40,c.61.1.1 92483,92484 2bh8A 101 1.33e+01 1yloA 348 1.36e+01 b.49.3.1,c.56.5.4 123659,123660 2az4A 429 1.40e+01 d.157.1.10 127597 1q1rA 431 1.41e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1i52A 236 1.42e+01 1i52A c.68.1.13 61767 1u9yA 284 1.43e+01 c.61.1.2,c.61.1.2 119655,119656 2pa4A 323 1.57e+01 2bonA 332 1.62e+01 2ogxB 270 1.64e+01 1r4aA 165 1.73e+01 c.37.1.8 96986 2e85A 159 1.76e+01 1ad3A 452 1.80e+01 1ad3A c.82.1.1 35335 1mkmA 249 1.86e+01 a.4.5.33,d.110.2.2 79242,79243 1o3yA 166 1.86e+01 c.37.1.8 86618 1oroA 213 1.90e+01 1opr c.61.1.1 34093 2oqbA 117 1.95e+01 1g57A 217 1.96e+01 1g57A d.115.1.2 60253 2oosA 338 2.00e+01 1a8y 367 2.02e+01 1a8y 1a8yA 367 2.02e+01 c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 2pa2A 151 2.02e+01 1y0bA 197 2.07e+01 c.61.1.1 122476 2o2yA 349 2.09e+01 c.2.1.2 138894 1g0sA 209 2.09e+01 1g0sA d.113.1.1 60187 1bg4A 302 2.15e+01 c.1.8.3 28806 1jalA 363 2.20e+01 c.37.1.8,d.15.10.2 84138,84139 2go9A 161 2.25e+01 1vhxA 150 2.28e+01 c.55.3.8 100712 1se8A 301 2.31e+01 b.40.4.3 105448 2ghpA 292 2.31e+01 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 2oq2A 261 2.33e+01 1ti6A 875 2.34e+01 b.52.2.2,c.81.1.1 106974,106975 1xv5A 401 2.40e+01 2yv5A 302 2.41e+01 1w77A 228 2.47e+01 c.68.1.13 120679 2oqrA 230 2.48e+01 2igbA 179 2.51e+01 2ggsA 273 2.60e+01 2d4pA 141 2.61e+01 1h4aX 173 2.62e+01 b.11.1.1,b.11.1.1 83479,83480 1vkmA 297 2.74e+01 c.138.1.1 108670 2r5nA 669 2.76e+01 1ta3B 303 2.78e+01 c.1.8.3 106732 1qgdA 662 2.80e+01 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1gctA 245 2.83e+01 5ptp b.47.1.2 26021 1r31A 428 2.84e+01 d.58.20.1,d.179.1.1 96897,96898 2iyeA 263 2.97e+01 2rerA 173 2.99e+01 1uc2A 481 3.02e+01 d.261.1.1 99161 1zq1C 633 3.08e+01 a.182.1.2,d.74.4.1,d.128.1.5 125493,125494,125495 1yphC 131 3.11e+01 1o63A 219 3.16e+01 c.94.1.1 92540 2orwA 184 3.16e+01 1w78A 422 3.19e+01 1bu6O 501 3.28e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 1lh0A 213 3.29e+01 c.61.1.1 73896 2v03A 303 3.32e+01 1vheA 373 3.42e+01 b.49.3.1,c.56.5.4 100669,100670 1hgxA 183 3.48e+01 1tc1A c.61.1.1 34027 1p16A 395 3.51e+01 b.40.4.6,d.142.2.3 87661,87662 1y96A 86 3.58e+01 1amm 174 3.70e+01 1amm 1ammA 174 3.70e+01 b.11.1.1,b.11.1.1 23587,23588 1uh5A 329 3.98e+01 c.2.1.2 107840 4gcr 174 4.02e+01 1amm 2p5xA 230 4.06e+01 2qvpA 275 4.12e+01 2b4aA 138 4.18e+01 c.23.1.1 127817 1l0bA 229 4.22e+01 c.15.1.3,c.15.1.3 73391,73392 2ix0A 663 4.27e+01 1h65A 270 4.35e+01 c.37.1.8 65640 2j01T 146 4.47e+01 2f1rA 171 4.48e+01 2id0A 644 4.53e+01 1kshA 186 4.61e+01 c.37.1.8 72914 1u4nA 310 4.66e+01 c.69.1.2 113021 1zq9A 285 4.70e+01 c.66.1.24 125505 1k6dA 220 4.78e+01 c.124.1.2 72082 1gjjA 168 4.81e+01 a.140.1.1,a.140.1.1 83291,83292 2e87A 357 4.96e+01 1rpxA 230 4.99e+01 1rpxA c.1.2.2 28536 2v9yA 334 5.04e+01 2iu4A 336 5.04e+01 2p5iA 288 5.19e+01 2ehjA 208 5.24e+01 1vcaA 202 5.25e+01 1vcaA b.1.1.3,b.1.1.4 21649,21685 1dmgA 225 5.33e+01 1dmgA c.22.1.1 31036 2j3wA 142 5.42e+01 d.110.4.3 137981 2hjeA 221 5.51e+01 2fxqA 264 5.53e+01 2r0xA 158 5.59e+01 1tyv 542 5.63e+01 1tyv 2z0dB 125 5.63e+01 d.15.1.3 140096 1oi4A 193 5.64e+01 c.23.16.2 87047 2fq6A 415 5.64e+01 c.67.1.3 133939 2p3rA 510 5.79e+01 c.55.1.4,c.55.1.4 139471,139472 2oczA 231 5.80e+01 2d1xA 66 5.83e+01 2gm5A 139 5.84e+01 2bsyA 278 5.84e+01 b.85.4.1,b.85.4.1 129129,129130 2adcA 229 6.00e+01 d.58.7.1,d.58.7.1 126582,126583 2f6rA 281 6.07e+01 1e7uA 961 6.18e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1f1xA 322 6.26e+01 d.32.1.3,d.32.1.3 83208,83209 1vc3B 97 6.26e+01 1vzoA 355 6.28e+01 d.144.1.7 108971 3cfuA 159 6.36e+01 1wkvA 389 6.40e+01 c.79.1.1 120989 2fvgA 340 6.44e+01 b.49.3.1,c.56.5.4 134201,134202 2z1cA 75 6.49e+01 2fiwA 172 6.51e+01 d.108.1.1 133539 1sdwA 314 6.58e+01 b.121.1.2,b.121.1.2 98810,98811 2pn0A 141 6.59e+01 1v0aA 178 6.60e+01 b.18.1.30 119815 1twfC 318 6.62e+01 d.74.3.1,d.181.1.1 112727,112728 1i6pA 220 6.64e+01 1ddzA c.53.2.1 61848 2ntiA 249 6.67e+01 2fukA 220 6.77e+01 1zsyA 357 6.80e+01 2yv1A 294 6.80e+01 1lnzA 342 6.91e+01 b.117.1.1,c.37.1.8 78112,78113 2ix2A 249 6.96e+01 2hc1A 291 7.12e+01 1o5oA 221 7.18e+01 c.61.1.1 92509 1rf6A 427 7.28e+01 d.68.2.2 97366 1q3iA 214 7.31e+01 d.220.1.1 104524 2iacA 142 7.35e+01 3bedA 142 7.35e+01 2ywvA 244 7.39e+01 2hm7A 310 7.40e+01 2a9oA 120 7.42e+01 c.23.1.1 126444 1cl1A 395 7.46e+01 1cl2A c.67.1.3 34395 2anuA 255 7.56e+01 c.6.3.1 127058 1vraB 215 7.63e+01 1a62 130 7.63e+01 1a62 1a62A 130 7.63e+01 a.140.3.1,b.40.4.5 64708,64709 1p99A 295 7.65e+01 c.94.1.1 94384 1fxrA 64 7.81e+01 1fxd d.58.1.4 38993 1c9oA 66 7.85e+01 1mjc b.40.4.5 25325 2dkzA 84 7.87e+01 2r47A 157 7.92e+01 1ys7A 233 7.92e+01 a.4.6.1,c.23.1.1 123961,123962 2rexB 197 7.95e+01 1js8A 394 7.97e+01 a.86.1.1,b.112.1.1 67219,67220