# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2he2A 102 1.05e-16 1g9oA 91 1.76e-16 1pdr b.36.1.1 60400 2i1nA 102 4.01e-16 2ozfA 92 5.74e-16 2he4A 90 8.20e-16 2ocsA 88 9.78e-16 2awxA 105 1.20e-15 2jikA 101 1.24e-15 2fe5A 94 1.30e-15 b.36.1.1 133323 2opgA 98 1.76e-15 1be9A 119 1.87e-15 1pdr b.36.1.1 24774 1tp5A 119 1.93e-15 b.36.1.1 119305 2fcfA 103 3.22e-15 b.36.1.1 133267 2qg1A 92 6.99e-15 2jilA 97 1.16e-14 2v90A 96 2.38e-14 1qavA 90 2.40e-14 1qauA b.36.1.1 24777 2fneA 117 5.22e-14 b.36.1.1 133813 2pktA 91 7.82e-14 2iwnA 97 1.18e-13 1q3oA 109 1.33e-13 b.36.1.1 95700 1n7eA 97 2.46e-13 b.36.1.1 91691 2egoA 96 8.53e-13 2q9vA 90 1.20e-12 2iwoA 120 1.40e-12 2uzcA 88 1.62e-12 2pa1A 87 1.65e-12 2h2bA 107 2.14e-12 2f5yA 91 2.33e-12 b.36.1.1 133015 1ihjA 98 2.85e-12 1pdr b.36.1.1 62382 2q3gA 89 3.69e-12 1l6oA 95 4.29e-12 b.36.1.1 84534 1wf7A 103 4.65e-12 b.36.1.1 114577 3bpuA 88 5.35e-12 2f0aA 98 7.62e-12 b.36.1.1 132661 2i04A 85 7.74e-12 2reyA 100 9.39e-12 2rczA 81 1.61e-11 1v5lA 103 2.21e-11 b.36.1.1 108378 2vphA 100 3.20e-11 2h3lA 103 3.21e-11 b.36.1.1 136046 1mfgA 95 3.59e-11 b.36.1.1 79043 1qauA 112 5.30e-11 1qauA b.36.1.1 24779 1nf3C 128 7.91e-11 b.36.1.1 85596 2gzvA 114 1.77e-10 1kwaA 88 2.35e-10 1kwaA b.36.1.1 24772 2qkvA 96 3.66e-10 1x45A 98 4.17e-10 b.36.1.1 121679 1r6jA 82 5.36e-10 b.36.1.1 97151 2eaqA 90 9.33e-09 1fc6A 388 3.01e-06 1fc6A b.36.1.3,c.14.1.2 64738,64739 2p3wA 112 4.85e-06 1lcyA 325 4.31e-05 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 2.48e-04 b.36.1.4,b.47.1.1 112400,112401 1y8tA 324 1.00e-03 b.36.1.4,b.47.1.1 122763,122764 2i6vA 87 3.11e-03 1sotA 320 7.43e-03 b.36.1.4,b.47.1.1 105852,105853 1zn8A 180 4.23e-02 c.61.1.1 125376 2dy0A 190 8.34e-02 1fxlA 167 3.59e-01 1b7fA d.58.7.1,d.58.7.1 39183,39184 2j3tD 219 5.59e-01 1qb7A 236 7.30e-01 1qb7A c.61.1.1 34087 2ps1A 226 9.11e-01 1fwkA 296 1.35e+00 1fwkA d.14.1.5,d.58.26.1 37576,39398 1bx4A 345 1.73e+00 1bx4A c.72.1.1 34935 1x3mA 415 2.11e+00 c.55.1.2,c.55.1.2 121664,121665 2e1zA 415 2.21e+00 3b59A 310 2.49e+00 1h72C 296 3.10e+00 d.14.1.5,d.58.26.1 60712,60713 1db3A 372 3.74e+00 1db3A c.2.1.2 29813 2dyoA 297 3.96e+00 1cliA 345 4.47e+00 1cliA d.79.4.1,d.139.1.1 39816,41459 1xx6A 191 4.48e+00 c.37.1.24,g.39.1.14 116139,116140 1lnzA 342 4.51e+00 b.117.1.1,c.37.1.8 78112,78113 1rypB 250 4.78e+00 1rypB d.153.1.4 41933 2hjgA 436 4.89e+00 1ev5A 264 5.24e+00 1bkpA d.117.1.1 40935 1evfA 264 5.37e+00 1bkpA d.117.1.1 40932 2o38A 120 5.37e+00 1vpqA 273 5.52e+00 c.1.32.1 113974 1qqqA 264 5.62e+00 1bkpA d.117.1.1 40931 2g8oA 264 5.64e+00 d.117.1.1 134779 2g8mA 264 5.71e+00 2dykA 161 6.01e+00 1o63A 219 6.28e+00 c.94.1.1 92540 2himA 358 6.36e+00 2gwnA 452 6.48e+00 1q52A 314 6.65e+00 c.14.1.3 95846 1g6sA 427 7.13e+00 1eps d.68.2.2 39584 1hvyA 288 7.28e+00 1bkpA d.117.1.1 41049 1g2qA 187 7.35e+00 c.61.1.1 65117 1xv5A 401 8.20e+00 2ix2B 245 8.35e+00 1cjbA 231 8.76e+00 1qk3A c.61.1.1 34079 1a4yA 460 8.97e+00 1a4yA c.10.1.1 30852 2btuA 346 9.13e+00 1mi4A 427 9.68e+00 d.68.2.2 79141 1se8A 301 9.72e+00 b.40.4.3 105448 1ad3A 452 9.80e+00 1ad3A c.82.1.1 35335 1mkmA 249 1.03e+01 a.4.5.33,d.110.2.2 79242,79243 2oqrA 230 1.11e+01 1uc2A 481 1.12e+01 d.261.1.1 99161 2vbuA 136 1.14e+01 1uh5A 329 1.48e+01 c.2.1.2 107840 2o2yA 349 1.57e+01 c.2.1.2 138894 1opr 213 1.64e+01 1opr 1fsgA 233 1.68e+01 1qk3A c.61.1.1 34029 2oosA 338 1.77e+01 2oqbA 117 1.77e+01 1yloA 348 1.79e+01 b.49.3.1,c.56.5.4 123659,123660 1bu6O 501 1.82e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 1cq3A 233 1.83e+01 1cq3A b.27.1.1 23923 2rerA 173 1.83e+01 2qvpA 275 1.86e+01 1ti6A 875 2.04e+01 b.52.2.2,c.81.1.1 106974,106975 1rypL 212 2.05e+01 d.153.1.4 41880 1zxxA 319 2.11e+01 2r8oA 669 2.12e+01 2r5nA 669 2.13e+01 2ogxB 270 2.13e+01 1fdr 248 2.16e+01 1fdr 1fdrA 248 2.16e+01 b.43.4.2,c.25.1.1 25653,31543 2rdqA 288 2.18e+01 2r0xA 158 2.20e+01 3cfyA 137 2.20e+01 1qgdA 662 2.22e+01 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1wlsA 328 2.25e+01 2fukA 220 2.25e+01 2p5xA 230 2.26e+01 1rpxA 230 2.40e+01 1rpxA c.1.2.2 28536 2ix2A 249 2.43e+01 2gzsA 278 2.49e+01 1w78A 422 2.50e+01 2az4A 429 2.51e+01 d.157.1.10 127597 1lh0A 213 2.51e+01 c.61.1.1 73896 2yv1A 294 2.57e+01 1fjrA 195 2.68e+01 1fjrA b.102.1.1 59855 2iacA 142 2.69e+01 3bedA 142 2.69e+01 1a8y 367 2.74e+01 1a8y 1a8yA 367 2.74e+01 c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 2hjeA 221 2.75e+01 2cwaA 263 2.76e+01 1un8A 552 2.80e+01 c.119.1.2,a.208.1.1 103806,99661 2gj8A 172 2.81e+01 c.37.1.8 135270 2qsqA 111 2.92e+01 2p3rA 510 2.99e+01 c.55.1.4,c.55.1.4 139471,139472 2pn0A 141 3.03e+01 1h3gA 601 3.04e+01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 2ywvA 244 3.09e+01 1xwsA 313 3.10e+01 d.144.1.7 116133 1zm8A 259 3.16e+01 2d4pA 141 3.19e+01 2bw3A 534 3.24e+01 a.270.1.1,c.55.3.12 129317,129318 2uz1A 563 3.29e+01 2bsyA 278 3.35e+01 b.85.4.1,b.85.4.1 129129,129130 1vdmA 153 3.42e+01 c.61.1.1 119994 1w30A 201 3.49e+01 c.61.1.1 114118 2qjcA 262 3.53e+01 2ghpA 292 3.57e+01 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 1rxxA 421 3.66e+01 d.126.1.4 98061 2e85A 159 3.69e+01 1f28A 297 3.85e+01 1bkpA d.117.1.1 59608 2uyeA 307 3.90e+01 1u9yA 284 3.93e+01 c.61.1.2,c.61.1.2 119655,119656 1ecfA 504 3.95e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1o6dA 163 4.07e+01 c.116.1.3 92567 1qfjA 232 4.12e+01 1qfjA b.43.4.2,c.25.1.1 25655,31545 1g57A 217 4.13e+01 1g57A d.115.1.2 60253 2cw8A 537 4.15e+01 1uthA 315 4.16e+01 c.94.1.1 108032 2bb3A 221 4.16e+01 c.90.1.1 128257 1q1rA 431 4.31e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1r13A 148 4.37e+01 d.169.1.1,h.1.1.1 96782,96783 1vchA 175 4.37e+01 c.61.1.1 119980 1vraB 215 4.45e+01 2bh8A 101 4.52e+01 2bnjA 303 4.56e+01 c.1.8.3 128832 2oynA 146 4.59e+01 1c9oA 66 4.64e+01 1mjc b.40.4.5 25325 1l1dA 152 4.64e+01 b.88.1.3 73452 2bikB 313 4.66e+01 2qf7A 1165 4.66e+01 1jalA 363 4.67e+01 c.37.1.8,d.15.10.2 84138,84139 1l1qA 186 4.67e+01 c.61.1.1 77653 1vheA 373 4.78e+01 b.49.3.1,c.56.5.4 100669,100670 1zq9A 285 4.84e+01 c.66.1.24 125505 2id0A 644 4.85e+01 1t6t1 118 4.86e+01 1p16A 395 4.97e+01 b.40.4.6,d.142.2.3 87661,87662 2z1cA 75 5.09e+01 2oczA 231 5.18e+01 1yphC 131 5.21e+01 1r31A 428 5.29e+01 d.58.20.1,d.179.1.1 96897,96898 1r4aA 165 5.29e+01 c.37.1.8 96986 2aamA 309 5.43e+01 c.1.8.15 126489 1h65A 270 5.45e+01 c.37.1.8 65640 1rypH 205 5.48e+01 d.153.1.4 41876 2iyeA 263 5.50e+01 2d8aA 348 5.58e+01 2a9oA 120 5.62e+01 c.23.1.1 126444 1q3iA 214 5.62e+01 d.220.1.1 104524 2qptA 550 5.70e+01 1e7uA 961 5.71e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 2p1zA 180 5.75e+01 2z80A 353 5.77e+01 1ys7A 233 5.91e+01 a.4.6.1,c.23.1.1 123961,123962 2b8tA 223 5.98e+01 c.37.1.24,g.39.1.14 128109,128110 1brt 277 6.03e+01 1brt 1brtA 277 6.03e+01 c.69.1.12 34699 1amm 174 6.06e+01 1amm 1ammA 174 6.06e+01 b.11.1.1,b.11.1.1 23587,23588 4gcr 174 6.06e+01 1amm 1vcaA 202 6.14e+01 1vcaA b.1.1.3,b.1.1.4 21649,21685 2bonA 332 6.19e+01 1sw2A 275 6.23e+01 c.94.1.1 106064 2nvoA 535 6.30e+01 1o7fA 469 6.36e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1vqoF 120 6.41e+01 d.79.3.1 120368 1s1iG 119 6.44e+01 i.1.1.1 105181 2ntiA 249 6.57e+01 2v03A 303 6.69e+01 2fvgA 340 6.73e+01 b.49.3.1,c.56.5.4 134201,134202 1broA 277 6.74e+01 1brt c.69.1.12 34700 1dmgA 225 6.75e+01 1dmgA c.22.1.1 31036 1sw5A 275 6.78e+01 c.94.1.1 106069 1y96A 86 6.88e+01 1eu1A 780 6.97e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 1ypvA 313 7.02e+01 1r62A 160 7.12e+01 d.122.1.3 104816 2faoA 309 7.12e+01 1gsjA 258 7.17e+01 c.73.1.2 70397 1gpjA 404 7.18e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1i1wA 303 7.21e+01 c.1.8.3 76732 1efvA 315 7.22e+01 1efvA c.26.2.3,c.31.1.2 31633,31728 2r1iA 172 7.22e+01 2g2nA 114 7.34e+01 2oz3A 404 7.38e+01 1p35A 299 7.38e+01 1p35A b.28.1.1 23925 1ha1 184 7.54e+01 1ha1 2go9A 161 7.59e+01 1xebA 150 7.63e+01 d.108.1.1 115219 1i52A 236 7.65e+01 1i52A c.68.1.13 61767 1fr3A 67 7.67e+01 1fr3A b.40.6.1 25436 2bryA 497 7.73e+01 2p90A 319 7.76e+01 1mo1A 87 7.78e+01 d.94.1.1 91363 2eiyA 308 7.80e+01 1vkmA 297 7.96e+01 c.138.1.1 108670