# TARGET T0387 # Using neural net dunbrack-40pc-3157-t2k-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0387.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 317.054 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 S 0.107 0.023 0.007 0.002 0.002 0.002 0.003 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.072 0.024 0.124 0.624 2 M 0.121 0.026 0.026 0.005 0.003 0.003 0.004 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.118 0.029 0.080 0.578 3 K 0.068 0.009 0.008 0.001 0.005 0.005 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.175 0.007 0.131 0.584 4 P 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.003 0.991 5 K 0.010 0.002 0.001 0.001 0.008 0.008 0.011 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.785 0.003 0.039 0.129 6 L 0.022 0.006 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.234 0.002 0.091 0.635 7 C 0.006 0.004 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.004 0.002 0.001 0.883 0.001 0.017 0.073 8 R 0.005 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.011 0.016 0.007 0.639 0.002 0.079 0.218 9 L 0.010 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.002 0.003 0.016 0.047 0.034 0.016 0.601 0.003 0.033 0.219 10 A 0.008 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.005 0.026 0.011 0.071 0.124 0.036 0.013 0.434 0.004 0.048 0.196 11 K 0.021 0.017 0.002 0.001 0.001 0.001 0.001 0.001 0.011 0.026 0.060 0.012 0.042 0.026 0.010 0.003 0.209 0.011 0.065 0.484 12 G 0.041 0.012 0.003 0.001 0.001 0.001 0.001 0.001 0.062 0.121 0.027 0.006 0.008 0.003 0.002 0.001 0.103 0.023 0.091 0.495 13 E 0.062 0.008 0.008 0.002 0.001 0.001 0.001 0.001 0.058 0.011 0.005 0.002 0.001 0.001 0.001 0.001 0.041 0.018 0.170 0.612 14 N 0.043 0.015 0.005 0.004 0.001 0.001 0.001 0.001 0.010 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.045 0.025 0.169 0.675 15 G 0.177 0.010 0.019 0.005 0.007 0.003 0.004 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.044 0.072 0.177 0.475 16 Y 0.124 0.007 0.035 0.007 0.011 0.012 0.009 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.125 0.022 0.218 0.424 17 G 0.037 0.004 0.014 0.004 0.059 0.033 0.019 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.302 0.007 0.114 0.401 18 F 0.023 0.003 0.005 0.003 0.062 0.102 0.082 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.441 0.003 0.061 0.193 19 H 0.009 0.002 0.001 0.001 0.006 0.014 0.022 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.005 0.752 0.002 0.040 0.125 20 L 0.006 0.005 0.001 0.001 0.001 0.003 0.003 0.004 0.001 0.001 0.001 0.001 0.003 0.007 0.002 0.004 0.764 0.001 0.037 0.156 21 N 0.004 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.003 0.018 0.015 0.030 0.012 0.741 0.002 0.041 0.117 22 A 0.010 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.006 0.001 0.002 0.003 0.004 0.009 0.007 0.489 0.003 0.067 0.386 23 I 0.027 0.010 0.002 0.001 0.001 0.001 0.001 0.001 0.034 0.007 0.032 0.010 0.026 0.031 0.009 0.007 0.367 0.006 0.105 0.326 24 R 0.031 0.009 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.005 0.008 0.003 0.007 0.003 0.002 0.001 0.154 0.007 0.155 0.611 25 G 0.067 0.012 0.003 0.001 0.001 0.001 0.001 0.001 0.023 0.035 0.002 0.001 0.001 0.001 0.001 0.001 0.080 0.025 0.160 0.589 26 L 0.235 0.010 0.021 0.002 0.001 0.001 0.001 0.001 0.028 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.044 0.017 0.145 0.491 27 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.008 0.987 28 G 0.066 0.002 0.009 0.001 0.018 0.003 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.124 0.016 0.116 0.636 29 S 0.291 0.003 0.005 0.004 0.001 0.002 0.008 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.430 0.007 0.054 0.189 30 F 0.015 0.003 0.001 0.001 0.016 0.005 0.008 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.820 0.001 0.036 0.091 31 I 0.006 0.007 0.001 0.001 0.010 0.012 0.006 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.007 0.597 0.001 0.054 0.278 32 K 0.002 0.002 0.001 0.001 0.001 0.001 0.005 0.004 0.001 0.001 0.001 0.001 0.001 0.006 0.002 0.001 0.921 0.001 0.012 0.041 33 E 0.009 0.009 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.008 0.002 0.041 0.014 0.019 0.015 0.425 0.004 0.074 0.373 34 V 0.007 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.714 0.002 0.052 0.201 35 Q 0.008 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.033 0.004 0.010 0.001 0.001 0.001 0.001 0.001 0.241 0.003 0.297 0.388 36 K 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.026 0.001 0.031 0.938 37 G 0.012 0.007 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.135 0.010 0.305 0.524 38 G 0.254 0.005 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.018 0.124 0.577 39 P 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.995 40 A 0.028 0.058 0.006 0.001 0.045 0.015 0.011 0.002 0.001 0.001 0.002 0.001 0.003 0.001 0.001 0.002 0.082 0.009 0.211 0.524 41 D 0.133 0.158 0.001 0.001 0.001 0.005 0.002 0.002 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.057 0.011 0.145 0.479 42 L 0.173 0.542 0.003 0.001 0.001 0.001 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.032 0.018 0.020 0.192 43 A 0.193 0.592 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.005 0.001 0.013 0.066 0.007 0.115 44 G 0.784 0.018 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.001 0.008 0.121 0.003 0.054 45 L 0.059 0.011 0.784 0.016 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.005 0.026 0.077 46 E 0.005 0.010 0.004 0.003 0.001 0.001 0.001 0.001 0.012 0.012 0.003 0.001 0.001 0.001 0.001 0.001 0.065 0.002 0.375 0.508 47 D 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.001 0.074 0.899 48 E 0.025 0.003 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.272 0.005 0.422 0.266 49 D 0.609 0.003 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.094 0.033 0.167 0.084 50 V 0.175 0.022 0.004 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.622 0.004 0.075 0.085 51 I 0.004 0.005 0.002 0.001 0.012 0.004 0.002 0.003 0.001 0.001 0.001 0.001 0.002 0.012 0.001 0.001 0.861 0.001 0.028 0.065 52 I 0.002 0.004 0.001 0.001 0.008 0.007 0.009 0.005 0.001 0.001 0.005 0.003 0.172 0.080 0.033 0.009 0.603 0.001 0.010 0.046 53 E 0.001 0.002 0.001 0.001 0.001 0.001 0.002 0.001 0.002 0.006 0.001 0.001 0.001 0.001 0.001 0.002 0.899 0.001 0.012 0.067 54 V 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.540 0.018 0.018 0.003 0.003 0.002 0.001 0.004 0.306 0.001 0.017 0.086 55 N 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.003 0.001 0.002 0.010 0.001 0.558 0.002 0.115 0.301 56 G 0.007 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.251 0.014 0.264 0.453 57 V 0.348 0.001 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.062 0.057 0.256 0.256 58 N 0.008 0.007 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.027 0.001 0.106 0.844 59 V 0.024 0.006 0.009 0.002 0.556 0.022 0.054 0.005 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.082 0.006 0.051 0.169 60 L 0.063 0.012 0.002 0.002 0.001 0.020 0.016 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.098 0.005 0.299 0.469 61 D 0.199 0.014 0.007 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.095 0.040 0.073 0.564 62 E 0.283 0.014 0.024 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.027 0.009 0.090 0.547 63 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.062 0.934 64 Y 0.023 0.006 0.004 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.092 0.006 0.128 0.736 65 E 0.025 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.214 0.733 66 K 0.032 0.051 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.564 0.346 67 V 0.037 0.758 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.031 0.171 68 V 0.005 0.954 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.007 0.031 69 D 0.002 0.969 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.024 70 R 0.008 0.973 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.014 71 I 0.019 0.970 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.005 72 Q 0.020 0.949 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.012 0.001 0.011 73 S 0.073 0.796 0.010 0.001 0.001 0.001 0.001 0.001 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.068 0.002 0.042 74 S 0.251 0.524 0.007 0.001 0.001 0.001 0.001 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.095 0.003 0.100 75 G 0.211 0.165 0.049 0.005 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.116 0.035 0.400 76 K 0.074 0.021 0.322 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.041 0.034 0.165 0.330 77 N 0.085 0.005 0.019 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.185 0.011 0.124 0.563 78 V 0.029 0.003 0.004 0.004 0.039 0.011 0.006 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.595 0.003 0.052 0.251 79 T 0.004 0.001 0.001 0.001 0.039 0.032 0.062 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.744 0.001 0.029 0.071 80 L 0.001 0.001 0.001 0.001 0.002 0.003 0.010 0.009 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.003 0.869 0.001 0.019 0.076 81 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.003 0.001 0.970 0.001 0.003 0.015 82 V 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.006 0.010 0.006 0.870 0.001 0.016 0.079 83 C 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.002 0.003 0.008 0.006 0.004 0.886 0.001 0.016 0.069 84 G 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.004 0.016 0.003 0.010 0.007 0.003 0.003 0.443 0.002 0.097 0.403 85 K 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.006 0.004 0.001 0.002 0.001 0.001 0.001 0.195 0.004 0.159 0.609 86 K 0.013 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.064 0.004 0.167 0.734 87 A 0.060 0.007 0.003 0.001 0.002 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.072 0.013 0.127 0.708 88 Q 0.107 0.025 0.005 0.003 0.006 0.003 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.090 0.025 0.160 0.567 89 D 0.214 0.019 0.016 0.004 0.008 0.005 0.011 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.101 0.040 0.128 0.444 90 T 0.062 0.026 0.009 0.002 0.006 0.008 0.004 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.098 0.010 0.087 0.679 91 V 0.027 0.032 0.008 0.002 0.019 0.025 0.011 0.005 0.002 0.001 0.002 0.001 0.008 0.004 0.002 0.002 0.309 0.007 0.089 0.446