# List of top-scoring protein chains for T0387.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g9oA 91 1.51e-07 b.36.1.1 60400 1gq5A 91 1.57e-07 b.36.1.1 76274 1i92A 91 1.63e-07 b.36.1.1 61990 1gq4A 90 1.67e-07 b.36.1.1 70340 2ocsA 88 2.74e-07 2he2A 102 3.56e-07 2he4A 90 3.70e-07 1um7A 113 5.44e-07 b.36.1.1 99579 2ozfA 92 6.24e-07 2dkrA 93 7.27e-07 1tp5A 119 9.32e-07 b.36.1.1 119305 2d90A 102 9.47e-07 2eejA 96 1.03e-06 1be9A 119 1.10e-06 b.36.1.1 24774 1rgrA 99 1.48e-06 b.36.1.1 104931 1kefA 93 1.71e-06 b.36.1.1 72369 1x5qA 110 1.81e-06 b.36.1.1 121717 2dm8A 116 1.97e-06 1pdrA 99 2.00e-06 b.36.1.1 24771 2jinA 102 2.10e-06 2r4hA 112 2.11e-06 2i1nA 102 2.20e-06 2edzA 114 2.21e-06 1iu0A 91 2.24e-06 b.36.1.1 83707 1zokA 93 2.46e-06 b.36.1.1 125451 2jikA 101 2.61e-06 2qg1A 92 2.63e-06 2iwqA 123 2.75e-06 2fcfA 103 2.77e-06 b.36.1.1 133267 2enoA 120 2.79e-06 2v90A 96 2.93e-06 2eeiA 106 3.00e-06 1wfvA 103 3.02e-06 b.36.1.1 114594 2opgA 98 3.04e-06 2i0iA 85 3.70e-06 b.36.1.1 136953 2fneA 117 3.94e-06 b.36.1.1 133813 2fe5A 94 4.31e-06 b.36.1.1 133323 1d5gA 96 4.38e-06 b.36.1.1 70080 1whaA 105 4.49e-06 b.36.1.1 114638 2awxA 105 4.54e-06 1uezA 101 4.59e-06 b.36.1.1 99286 2oqsA 97 5.33e-06 2jilA 97 5.68e-06 2g2lA 105 5.93e-06 1vj6A 102 6.02e-06 b.36.1.1 120064 1gm1A 94 6.08e-06 b.36.1.1 70271 2bygA 117 6.19e-06 b.36.1.1 129480 2awwA 105 6.51e-06 2pktA 91 6.54e-06 2awuA 105 6.88e-06 1uewA 114 7.12e-06 b.36.1.1 99281 2dc2A 103 7.13e-06 1qlcA 95 7.74e-06 b.36.1.1 24776 1uhpA 107 1.17e-05 b.36.1.1 99400 1q7xA 108 1.18e-05 b.36.1.1 96059 1uf1A 128 1.28e-05 b.36.1.1 99288 2dazA 124 1.29e-05 1um1A 110 1.31e-05 b.36.1.1 99578 2omjA 89 1.33e-05 2i0lA 84 1.50e-05 1oziA 99 1.68e-05 b.36.1.1 93845 2dluA 111 1.72e-05 2dmzA 129 1.76e-05 2djtA 104 1.84e-05 2dlsA 93 1.94e-05 2ogpA 97 1.98e-05 1x5nA 114 2.06e-05 b.36.1.1 121714 1ujuA 111 2.06e-05 b.36.1.1 99469 2v1wA 90 2.15e-05 2ehrA 117 2.25e-05 1wi2A 104 2.36e-05 b.36.1.1 114659 1wf8A 107 2.39e-05 b.36.1.1 120967 2o2tA 117 2.40e-05 2yuyA 126 2.42e-05 1qavA 90 2.44e-05 b.36.1.1 24777 1z86A 87 2.56e-05 b.36.1.1 124690 2pdzA 86 2.60e-05 b.36.1.1 24778 2iwnA 97 2.63e-05 1q3oA 109 2.86e-05 b.36.1.1 95700 2vrfA 95 2.97e-05 1vb7A 94 3.04e-05 b.36.1.1 108474 2fn5A 94 3.17e-05 2g5mB 113 3.46e-05 1ueqA 123 3.51e-05 b.36.1.1 99271 1ihjA 98 3.51e-05 b.36.1.1 62382 1z87A 263 3.59e-05 2eegA 94 4.09e-05 2f5yA 91 4.19e-05 b.36.1.1 133015 1n7eA 97 4.53e-05 b.36.1.1 91691 2uzcA 88 5.07e-05 1whdA 100 5.08e-05 b.36.1.1 114641 2pa1A 87 5.43e-05 1t2mA 101 5.46e-05 b.36.1.1 119133 1xz9A 101 5.89e-05 b.36.1.1 122471 2ainA 93 5.93e-05 1qauA 112 6.02e-05 b.36.1.1 24779 1qavB 115 6.17e-05 b.36.1.1 24780 1b8qA 127 6.35e-05 b.36.1.1 24781 2q9vA 90 6.66e-05 1uitA 117 7.62e-05 b.36.1.1 99433 1w9eA 166 9.11e-05 b.36.1.1,b.36.1.1 120779,120780 1wf7A 103 9.58e-05 b.36.1.1 114577 2egkA 101 0.000107 2pntA 98 0.000111 2eehA 100 0.000121 2egoA 96 0.000123 1wh1A 124 0.000125 b.36.1.1 114629 1m5zA 91 0.000135 b.36.1.1 78676 1v5lA 103 0.000136 b.36.1.1 108378 1x8sA 102 0.000143 b.36.1.1 114967 2iwoA 120 0.000144 2i04A 85 0.000146 1rzxA 98 0.000149 b.36.1.1 98236 1ry4A 128 0.000152 b.36.1.1 98085 1rgwA 85 0.000153 b.36.1.1 97455 2db5A 128 0.000154 2q3gA 89 0.000157 1wjlA 90 0.000164 b.36.1.1 114701 1x6dA 119 0.000169 b.36.1.2 121739 2csjA 117 0.000212 b.36.1.1 130771 1mfgA 95 0.000215 b.36.1.1 79043 1x5rA 112 0.000215 b.36.1.1 121718 1p1eA 101 0.000217 b.36.1.1 93898 1nf3C 128 0.000219 b.36.1.1 85596 2h3lA 103 0.000220 b.36.1.1 136046 1v5qA 122 0.000225 b.36.1.1 108383 2jweA 88 0.000230 1uepA 103 0.000260 b.36.1.1 99270 2qbwA 195 0.000264 2rczA 81 0.000289 2eaqA 90 0.000312 1va8A 113 0.000323 b.36.1.1 119903 1p1dA 196 0.000335 b.36.1.1,b.36.1.1 93896,93897 2f0aA 98 0.000369 b.36.1.1 132661 1l6oA 95 0.000375 b.36.1.1 84534 2osgA 83 0.000382 1wg6A 127 0.000392 b.36.1.1 114603 2reyA 100 0.000428 2d92A 108 0.000446 1mc7A 95 0.000454 b.36.1.1 91241 2h2cA 107 0.000499 2h2bA 107 0.000500 1wi4A 109 0.000500 b.36.1.1 120973 1zubA 114 0.000581 b.36.1.1 125665 2h3mA 97 0.000624 2cssA 121 0.000631 b.36.1.1 130780 3b76A 118 0.000719 1ujdA 117 0.000739 b.36.1.1 99454 2ev8A 97 0.000744 2pkuA 87 0.000776 3bpuA 88 0.000781 2gzvA 114 0.000807 2ejyA 97 0.000812 2edpA 100 0.000908 1kwaA 88 0.000915 b.36.1.1 24772 2vphA 100 0.000987 1ufxA 103 0.001006 b.36.1.1 99359 1i16A 130 0.001021 b.36.1.2 24787 1wfgA 131 0.001058 b.36.1.1 114581 1u37A 89 0.001059 b.36.1.1 119501 1x45A 98 0.001082 b.36.1.1 121679 2cs5A 119 0.001177 b.36.1.1 130747 2yt8A 94 0.001432 1v62A 117 0.001518 b.36.1.1 108390 2edvA 96 0.001621 1u3bA 185 0.001759 b.36.1.1,b.36.1.1 119508,119509 1v6bA 118 0.001912 b.36.1.1 108394 2yt7A 101 0.002011 2joaA 105 0.002160 2ytwA 118 0.002208 1y7nA 90 0.002420 b.36.1.1 122700 1u39A 80 0.002836 b.36.1.1 119503 1wifA 126 0.002931 b.36.1.1 114669 1ujvA 96 0.003308 b.36.1.1 99470 2e7kA 91 0.003451 2pzdA 113 0.003530 1vaeA 111 0.003989 b.36.1.1 108466 2qktA 90 0.004713 2p3wA 112 0.004891 2qkvA 96 0.006498 1ky9A 448 0.007185 b.36.1.4,b.47.1.1 73198,73199 1fc6A 388 0.009762 b.36.1.3,c.14.1.2 64738,64739 1fc9A 388 0.01170 b.36.1.3,c.14.1.2 64742,64743 1r6jA 82 0.01270 b.36.1.1 97151 2yubA 118 0.01387 1obxA 79 0.01532 b.36.1.1 86783 1lcyA 325 0.02136 b.36.1.4,b.47.1.1 73834,73835 2d8iA 114 0.02507 1y8tA 324 0.1033 b.36.1.4,b.47.1.1 122763,122764 1te0A 318 0.1616 b.36.1.4,b.47.1.1 112400,112401 1sotA 320 0.1618 b.36.1.4,b.47.1.1 105852,105853 1sozA 314 0.1627 b.36.1.4,b.47.1.1 105859,105860 2hgaA 125 0.3132 2j3tD 219 16.60 2dy0A 190 22.55 2bh4X 134 24.63 2bgvX 134 26.09 1db3A 372 31.21 c.2.1.2 29813 1lnzA 342 38.89 b.117.1.1,c.37.1.8 78112,78113 1ao0A 459 39.15 c.61.1.1,d.153.1.1 34049,41816 1gph1 465 39.35 1e6vC 258 48.13 d.58.31.1 39439 2ps1A 226 53.12 1bx4A 345 53.21 c.72.1.1 34935 1cotA 129 58.37 a.3.1.1 15899 1hw3A 313 62.76 d.117.1.1 41053 1ju6A 313 63.03 d.117.1.1 63289 1hzwA 290 63.28 d.117.1.1 61464 1hvyA 288 63.30 d.117.1.1 41049 1ypvA 313 63.57 1hw4A 355 63.78 d.117.1.1 41054 1ss3A 50 67.21 g.2.3.1 105975 2nslA 169 71.81 1d7aA 161 73.32 c.23.8.1 31277 2nshA 169 73.89 1qczA 169 74.50 c.23.8.1 31276 2h2qA 521 79.17 2ywvA 244 82.24 2eguA 308 82.57 1yb2A 275 88.09 c.66.1.13 122868