# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ozfA	92	5.07e-17		
1g9oA	91	1.12e-16	b.36.1.1	60400
2uzcA	88	1.75e-16		
2he2A	102	3.40e-16		
2pktA	91	3.51e-16		
2opgA	98	4.22e-16		
1tp5A	119	4.60e-16	b.36.1.1	119305
2iwnA	97	5.54e-16		
2he4A	90	5.59e-16		
2egoA	96	5.75e-16		
1pdr	99	7.03e-16		
2eaqA	90	7.20e-16		
2qg1A	92	8.22e-16		
2jikA	101	8.42e-16		
2awxA	105	8.43e-16		
2fneA	117	1.13e-15	b.36.1.1	133813
1wf7A	103	1.15e-15	b.36.1.1	114577
1n7eA	97	1.28e-15	b.36.1.1	91691
1be9A	119	1.32e-15	b.36.1.1	24774
2fe5A	94	1.44e-15	b.36.1.1	133323
2ocsA	88	1.52e-15		
2jilA	97	1.52e-15		
1qauA	112	2.01e-15	b.36.1.1	24779
2i1nA	102	2.31e-15		
2i04A	85	2.65e-15		
1x45A	98	3.25e-15	b.36.1.1	121679
1i92A	91	3.48e-15	b.36.1.1	61990
2q9vA	90	3.63e-15		
1qavA	90	3.92e-15	b.36.1.1	24777
2gzvA	114	4.56e-15		
2f5yA	91	5.33e-15	b.36.1.1	133015
1q3oA	109	5.60e-15	b.36.1.1	95700
2q3gA	89	5.87e-15		
2f0aA	98	6.14e-15	b.36.1.1	132661
1m5zA	91	6.52e-15	b.36.1.1	78676
2pa1A	87	8.29e-15		
1v5lA	103	8.42e-15	b.36.1.1	108378
2iwoA	120	1.32e-14		
1kwaA	88	1.90e-14	b.36.1.1	24772
2h3lA	103	3.49e-14	b.36.1.1	136046
2h2bA	107	3.84e-14		
1nf3C	128	3.88e-14	b.36.1.1	85596
1fc6A	388	4.77e-14	b.36.1.3,c.14.1.2	64738,64739
1ihjA	98	7.18e-14	b.36.1.1	62382
2vphA	100	1.10e-13		
2fcfA	103	1.95e-13	b.36.1.1	133267
1mfgA	95	2.78e-13	b.36.1.1	79043
1r6jA	82	2.93e-13	b.36.1.1	97151
1l6oA	95	3.79e-13	b.36.1.1	84534
1b8qA	127	5.42e-13	b.36.1.1	24781
1qavB	115	9.31e-13	b.36.1.1	24780
2qkvA	96	1.17e-12		
2rczA	81	1.32e-12		
2reyA	100	3.09e-12		
3bpuA	88	1.55e-11		
1ky9A	448	1.07e-10	b.36.1.4,b.47.1.1	73198,73199
2p3wA	112	7.65e-09		
1te0A	318	2.05e-08	b.36.1.4,b.47.1.1	112400,112401
1y8tA	324	2.62e-08	b.36.1.4,b.47.1.1	122763,122764
2i6vA	87	4.62e-08		
1lcyA	325	4.96e-08	b.36.1.4,b.47.1.1	73834,73835
1sotA	320	3.50e-07	b.36.1.4,b.47.1.1	105852,105853
1n6eA	1071	2.56e-05	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	80149,80150,80151,80152
2adzA	178	4.94e-05	b.55.1.1	126599
1k32A	1045	0.000143	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.004743	c.14.1.2	66425
1oroA	213	0.6603	c.61.1.1	34093
1lh0A	213	0.7528	c.61.1.1	73896
2ps1A	226	1.085		
1rqpA	299	1.726	b.141.1.1,c.132.1.1	97754,97755
1ao0A	459	1.938	c.61.1.1,d.153.1.1	34049,41816
1y0bA	197	2.340	c.61.1.1	122476
2g8oA	264	2.539	d.117.1.1	134779
2g8mA	264	2.553		
1opr	213	2.625		
2yzkA	178	2.657		
1ypvA	313	2.936		
1dekA	241	3.238	c.37.1.1	31842
2p1zA	180	3.799		
2cw5A	255	4.505		
1g0rA	293	5.058	c.68.1.6	34532
1ecfA	504	6.826	c.61.1.1,d.153.1.1	34053,41820
2igbA	179	6.843		
2q6kA	283	7.208		
1q33A	292	8.381	d.113.1.1	95657
2q07A	306	8.697		
1vchA	175	9.236	c.61.1.1	119980
1b02A	279	9.613	d.117.1.1	41035
1bkpA	278	10.63	d.117.1.1	41029
1gph1	465	11.32		
1f28A	297	11.40	d.117.1.1	59608
2f4nA	273	12.29		
1ev5A	264	13.32	d.117.1.1	40935
1eudA	311	13.81	c.2.1.8,c.23.4.1	30312,31140
1p16A	395	15.34	b.40.4.6,d.142.2.3	87661,87662
3bkxA	275	15.67		
1ta9A	450	16.86		
1yb2A	275	17.57	c.66.1.13	122868
1xm7A	195	19.00	d.159.1.8	115473
2go3A	267	19.08	d.14.1.7,d.14.1.7	135422,135423
2plcA	274	19.58	c.1.18.2	29614
1z7yA	322	21.64	c.79.1.1	124679
2scuA	288	21.75	c.2.1.8,c.23.4.1	30303,31131
1axwA	265	22.52	d.117.1.1	40938
1aiqA	264	22.53	d.117.1.1	40967
2vesA	299	23.84		
2tscA	264	27.19	d.117.1.1	40952
3bs5B	80	27.69		
1uc2A	481	28.02	d.261.1.1	99161
1u9yA	284	28.86	c.61.1.2,c.61.1.2	119655,119656
2guiA	194	31.17	c.55.3.5	135737
1wd5A	208	34.01	c.61.1.1	114524
1f6yA	262	34.77	c.1.21.2	29673
1vr5A	547	35.26	c.94.1.1	120437
2yvaA	196	35.97		
1pt6A	213	38.63	c.62.1.1	95091
2e7fA	262	45.08		
1omoA	322	45.84	c.2.1.13	104017
1s8nA	205	48.49	c.23.1.1	105374
1evfA	264	49.17	d.117.1.1	40932
1j53A	186	49.75	c.55.3.5	77076
1qqqA	264	50.74	d.117.1.1	40931
1ckmA	330	50.94	b.40.4.6,d.142.2.3	25358,41585
2i71A	400	51.29		
1zq9A	285	53.29	c.66.1.24	125505
1o58A	303	54.02	c.79.1.1	92491
3bs5A	106	56.74		
2zbvA	263	59.35		
1hvyA	288	59.71	d.117.1.1	41049
1scuA	288	60.68	c.2.1.8,c.23.4.1	30307,31135
1q7zA	566	60.81	c.1.21.2,c.1.26.1	96090,96091
1fr3A	67	61.32	b.40.6.1	25436
1h4pA	408	61.50	c.1.8.3	90617
1h5rA	293	62.16	c.68.1.6	65623
1qyrA	252	65.45	c.66.1.24	104657
1l2tA	235	70.21	c.37.1.12	73514
3bifA	468	71.65	c.37.1.7,c.60.1.4	31962,34008
2q02A	272	73.02		
1mc3A	296	80.40	c.68.1.6	78943
1xv5A	401	84.43		
2h1rA	299	85.08		
1zgzA	122	85.49	c.23.1.1	125065
1l1qA	186	85.80	c.61.1.1	77653
2ikkA	173	86.27		
1xhfA	123	88.25	c.23.1.1	122003
1a4yA	460	88.71	c.10.1.1	30852