# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ozfA 92 6.08e-17 1g9oA 91 1.78e-16 b.36.1.1 60400 2uzcA 88 2.91e-16 2pktA 91 4.36e-16 2he2A 102 5.16e-16 2iwnA 97 5.91e-16 1wf7A 103 6.89e-16 b.36.1.1 114577 2jikA 101 6.92e-16 2opgA 98 6.96e-16 2he4A 90 7.67e-16 1tp5A 119 8.12e-16 b.36.1.1 119305 2egoA 96 8.74e-16 2awxA 105 9.48e-16 1n7eA 97 1.04e-15 b.36.1.1 91691 1pdr 99 1.07e-15 2qg1A 92 1.16e-15 2fneA 117 1.19e-15 b.36.1.1 133813 2fe5A 94 1.20e-15 b.36.1.1 133323 2jilA 97 1.47e-15 2eaqA 90 1.49e-15 2i1nA 102 1.94e-15 1be9A 119 1.98e-15 b.36.1.1 24774 1x45A 98 2.10e-15 b.36.1.1 121679 1qauA 112 2.39e-15 b.36.1.1 24779 2ocsA 88 2.56e-15 2i04A 85 3.44e-15 2gzvA 114 3.87e-15 1qavA 90 4.20e-15 b.36.1.1 24777 2q9vA 90 5.04e-15 1m5zA 91 5.35e-15 b.36.1.1 78676 1i92A 91 7.06e-15 b.36.1.1 61990 1q3oA 109 7.69e-15 b.36.1.1 95700 2f0aA 98 8.72e-15 b.36.1.1 132661 2q3gA 89 9.40e-15 2f5yA 91 9.87e-15 b.36.1.1 133015 2pa1A 87 1.09e-14 1v5lA 103 1.09e-14 b.36.1.1 108378 2iwoA 120 2.43e-14 2h3lA 103 2.65e-14 b.36.1.1 136046 1kwaA 88 2.75e-14 b.36.1.1 24772 2h2bA 107 4.17e-14 1fc6A 388 4.40e-14 b.36.1.3,c.14.1.2 64738,64739 1nf3C 128 7.18e-14 b.36.1.1 85596 2vphA 100 9.16e-14 1ihjA 98 9.34e-14 b.36.1.1 62382 1mfgA 95 1.68e-13 b.36.1.1 79043 2fcfA 103 2.04e-13 b.36.1.1 133267 1b8qA 127 3.48e-13 b.36.1.1 24781 1r6jA 82 4.03e-13 b.36.1.1 97151 2qkvA 96 4.82e-13 2rczA 81 6.41e-13 1l6oA 95 8.14e-13 b.36.1.1 84534 1qavB 115 1.50e-12 b.36.1.1 24780 2reyA 100 2.37e-12 3bpuA 88 2.28e-11 1ky9A 448 1.08e-10 b.36.1.4,b.47.1.1 73198,73199 2p3wA 112 1.13e-08 1te0A 318 1.50e-08 b.36.1.4,b.47.1.1 112400,112401 1y8tA 324 1.81e-08 b.36.1.4,b.47.1.1 122763,122764 1lcyA 325 3.06e-08 b.36.1.4,b.47.1.1 73834,73835 2i6vA 87 4.04e-08 1sotA 320 4.31e-07 b.36.1.4,b.47.1.1 105852,105853 1n6eA 1071 3.73e-05 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 2adzA 178 7.50e-05 b.55.1.1 126599 1k32A 1045 0.000139 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 0.005717 c.14.1.2 66425 1oroA 213 0.3120 c.61.1.1 34093 2ps1A 226 0.6049 1lh0A 213 0.6468 c.61.1.1 73896 1opr 213 1.133 1y0bA 197 1.291 c.61.1.1 122476 1rqpA 299 1.524 b.141.1.1,c.132.1.1 97754,97755 2yzkA 178 1.715 2p1zA 180 1.857 1ao0A 459 2.084 c.61.1.1,d.153.1.1 34049,41816 2g8oA 264 2.381 d.117.1.1 134779 2g8mA 264 2.420 1ypvA 313 2.589 2cw5A 255 3.141 2igbA 179 3.469 1dekA 241 4.632 c.37.1.1 31842 2q07A 306 4.776 1ecfA 504 5.206 c.61.1.1,d.153.1.1 34053,41820 1ev5A 264 6.111 d.117.1.1 40935 2q6kA 283 6.591 1g0rA 293 7.734 c.68.1.6 34532 1bkpA 278 9.045 d.117.1.1 41029 1yb2A 275 9.492 c.66.1.13 122868 1wd5A 208 9.845 c.61.1.1 114524 1b02A 279 10.19 d.117.1.1 41035 1vchA 175 10.44 c.61.1.1 119980 1eudA 311 11.86 c.2.1.8,c.23.4.1 30312,31140 2f4nA 273 12.06 3bkxA 275 12.77 1q33A 292 12.80 d.113.1.1 95657 1f28A 297 13.36 d.117.1.1 59608 1gph1 465 13.81 2scuA 288 17.19 c.2.1.8,c.23.4.1 30303,31131 1aiqA 264 18.19 d.117.1.1 40967 1axwA 265 18.53 d.117.1.1 40938 1ta9A 450 19.00 1evfA 264 21.78 d.117.1.1 40932 1l1qA 186 22.12 c.61.1.1 77653 1qqqA 264 22.37 d.117.1.1 40931 2dy0A 190 24.05 2yvaA 196 25.83 1omoA 322 25.93 c.2.1.13 104017 1zn8A 180 25.98 c.61.1.1 125376 2jbhA 225 26.36 2vesA 299 26.54 1u9yA 284 27.65 c.61.1.2,c.61.1.2 119655,119656 2tscA 264 29.19 d.117.1.1 40952 1z7yA 322 31.06 c.79.1.1 124679 2go3A 267 32.43 d.14.1.7,d.14.1.7 135422,135423 1uc2A 481 33.27 d.261.1.1 99161 3bs5B 80 39.10 1f6yA 262 39.62 c.1.21.2 29673 1p16A 395 40.92 b.40.4.6,d.142.2.3 87661,87662 2guiA 194 43.18 c.55.3.5 135737 1scuA 288 44.74 c.2.1.8,c.23.4.1 30307,31135 2i71A 400 46.66 1pt6A 213 47.37 c.62.1.1 95091 1zq9A 285 47.92 c.66.1.24 125505 1hvyA 288 48.10 d.117.1.1 41049 2ikkA 173 51.01 1ckmA 330 52.16 b.40.4.6,d.142.2.3 25358,41585 1o5oA 221 53.04 c.61.1.1 92509 2zbvA 263 56.17 1xm7A 195 59.48 d.159.1.8 115473 1mc3A 296 60.16 c.68.1.6 78943 1w30A 201 61.27 c.61.1.1 114118 1q7zA 566 64.07 c.1.21.2,c.1.26.1 96090,96091 1xahA 354 64.51 2epgA 487 65.01 1qyrA 252 65.46 c.66.1.24 104657 1fr3A 67 66.67 b.40.6.1 25436 2hd9A 145 71.21 2h1rA 299 72.30 2v40A 459 75.54 1vqoA 240 76.23 b.34.5.3,b.40.4.5 120361,120362 1b5eA 246 77.60 d.117.1.1 41056 1vb3A 428 78.44 c.79.1.1 119942 1dy2A 180 79.28 d.169.1.5 42451 2e7fA 262 84.83 2plcA 274 87.85 c.1.18.2 29614 1zgzA 122 88.93 c.23.1.1 125065