# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ozfA 92 3.89e-16 1g9oA 91 9.10e-16 b.36.1.1 60400 2uzcA 88 1.79e-15 2he2A 102 1.95e-15 2eaqA 90 2.00e-15 1tp5A 119 2.22e-15 b.36.1.1 119305 2pktA 91 2.74e-15 2qg1A 92 2.75e-15 2iwnA 97 2.97e-15 2opgA 98 3.16e-15 2egoA 96 4.33e-15 1pdr 99 4.71e-15 2he4A 90 4.89e-15 1wf7A 103 5.42e-15 b.36.1.1 114577 2fneA 117 5.44e-15 b.36.1.1 133813 2jikA 101 5.55e-15 2awxA 105 5.97e-15 1be9A 119 6.94e-15 b.36.1.1 24774 1n7eA 97 7.08e-15 b.36.1.1 91691 1qauA 112 8.07e-15 b.36.1.1 24779 2fe5A 94 1.02e-14 b.36.1.1 133323 2i04A 85 1.29e-14 2f0aA 98 1.35e-14 b.36.1.1 132661 2jilA 97 1.47e-14 2ocsA 88 1.50e-14 2gzvA 114 1.73e-14 2i1nA 102 1.76e-14 2q9vA 90 1.76e-14 1x45A 98 2.00e-14 b.36.1.1 121679 2pa1A 87 2.23e-14 1i92A 91 2.81e-14 b.36.1.1 61990 2f5yA 91 2.83e-14 b.36.1.1 133015 1v5lA 103 3.43e-14 b.36.1.1 108378 1qavA 90 4.14e-14 b.36.1.1 24777 2q3gA 89 4.44e-14 1m5zA 91 6.28e-14 b.36.1.1 78676 1q3oA 109 6.44e-14 b.36.1.1 95700 1kwaA 88 8.48e-14 b.36.1.1 24772 2iwoA 120 1.27e-13 1fc6A 388 1.60e-13 b.36.1.3,c.14.1.2 64738,64739 2h3lA 103 2.09e-13 b.36.1.1 136046 2h2bA 107 2.16e-13 2vphA 100 2.33e-13 1nf3C 128 3.53e-13 b.36.1.1 85596 1ihjA 98 6.41e-13 b.36.1.1 62382 2fcfA 103 9.05e-13 b.36.1.1 133267 1b8qA 127 1.21e-12 b.36.1.1 24781 1l6oA 95 1.41e-12 b.36.1.1 84534 1r6jA 82 1.45e-12 b.36.1.1 97151 1mfgA 95 1.64e-12 b.36.1.1 79043 1qavB 115 2.10e-12 b.36.1.1 24780 2qkvA 96 2.84e-12 2rczA 81 7.38e-12 2reyA 100 1.11e-11 3bpuA 88 8.14e-11 1ky9A 448 8.59e-11 b.36.1.4,b.47.1.1 73198,73199 2p3wA 112 5.40e-09 1lcyA 325 1.40e-08 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 2.36e-08 b.36.1.4,b.47.1.1 112400,112401 2i6vA 87 3.40e-08 1y8tA 324 4.30e-08 b.36.1.4,b.47.1.1 122763,122764 1sotA 320 4.58e-07 b.36.1.4,b.47.1.1 105852,105853 1n6eA 1071 9.36e-06 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 2adzA 178 2.83e-05 b.55.1.1 126599 1k32A 1045 4.82e-05 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 0.001494 c.14.1.2 66425 1oroA 213 0.4119 c.61.1.1 34093 2ps1A 226 0.4902 2yzkA 178 0.6671 1y0bA 197 0.8602 c.61.1.1 122476 1rqpA 299 0.9613 b.141.1.1,c.132.1.1 97754,97755 1lh0A 213 1.594 c.61.1.1 73896 1ao0A 459 1.750 c.61.1.1,d.153.1.1 34049,41816 1zn8A 180 2.425 c.61.1.1 125376 2cw5A 255 3.050 2g8mA 264 3.079 2g8oA 264 3.084 d.117.1.1 134779 1ecfA 504 3.715 c.61.1.1,d.153.1.1 34053,41820 1g0rA 293 4.203 c.68.1.6 34532 2p1zA 180 4.269 1ypvA 313 4.814 1dekA 241 5.024 c.37.1.1 31842 2q07A 306 5.164 2q6kA 283 5.744 1opr 213 8.454 1vchA 175 8.548 c.61.1.1 119980 2dy0A 190 8.709 1gph1 465 8.973 1l1qA 186 9.154 c.61.1.1 77653 1p16A 395 12.90 b.40.4.6,d.142.2.3 87661,87662 1ev5A 264 13.57 d.117.1.1 40935 2igbA 179 15.02 1yb2A 275 18.51 c.66.1.13 122868 1z7yA 322 18.53 c.79.1.1 124679 2f4nA 273 20.72 2aeeA 211 21.25 c.61.1.1 126620 1vr5A 547 23.05 c.94.1.1 120437 2bgxA 261 26.38 a.20.1.1,d.118.1.1 128504,128505 2i71A 400 26.73 1bkpA 278 27.05 d.117.1.1 41029 2nooA 502 28.26 1u9yA 284 30.19 c.61.1.2,c.61.1.2 119655,119656 1q33A 292 30.70 d.113.1.1 95657 1ta9A 450 32.52 1axwA 265 33.52 d.117.1.1 40938 1b02A 279 33.57 d.117.1.1 41035 1uc2A 481 34.87 d.261.1.1 99161 2vesA 299 35.42 1aiqA 264 36.20 d.117.1.1 40967 1o58A 303 37.45 c.79.1.1 92491 3bkxA 275 38.75 1h5rA 293 38.98 c.68.1.6 65623 1omoA 322 39.33 c.2.1.13 104017 2yvaA 196 40.39 1f6yA 262 41.67 c.1.21.2 29673 2go3A 267 43.27 d.14.1.7,d.14.1.7 135422,135423 1f28A 297 43.87 d.117.1.1 59608 1eudA 311 44.61 c.2.1.8,c.23.4.1 30312,31140 1zq9A 285 46.97 c.66.1.24 125505 1ckmA 330 47.14 b.40.4.6,d.142.2.3 25358,41585 2d5wA 603 49.50 1xtlA 175 49.83 1xtmA 175 50.32 2guiA 194 52.45 c.55.3.5 135737 2tscA 264 53.11 d.117.1.1 40952 1evfA 264 55.47 d.117.1.1 40932 2o7iA 592 56.66 1r94A 118 57.68 b.124.1.1 97251 1s98A 107 57.90 b.124.1.1 105377 1gsjA 258 60.95 c.73.1.2 70397 1qqqA 264 61.15 d.117.1.1 40931 1ecfB 504 61.91 c.61.1.1,d.153.1.1 34054,41821 1qyrA 252 62.14 c.66.1.24 104657 2epgA 487 64.16 1h4pA 408 65.50 c.1.8.3 90617 1csp 67 65.66 1wd5A 208 66.32 c.61.1.1 114524 1zeqX 84 67.63 2plcA 274 68.74 c.1.18.2 29614 1ounA 127 72.07 d.17.4.2 38090 1h9jA 145 72.19 b.40.6.2,b.40.6.2 60829,60830 1fr3A 67 74.11 b.40.6.1 25436 1dqpA 230 75.92 c.61.1.1 34069 1vs0A 310 79.33 1rzmA 338 79.84 c.1.10.4 105137 1qr0A 228 81.36 d.150.1.1,d.150.1.1 59038,59039 1m4yA 171 82.17 d.153.1.4 84802 1zgzA 122 82.31 c.23.1.1 125065 1j53A 186 82.62 c.55.3.5 77076 1x0gA 112 88.99