# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ozfA 92 1.50e-16 1g9oA 91 2.79e-16 b.36.1.1 60400 2uzcA 88 4.49e-16 2eaqA 90 6.99e-16 2pktA 91 7.83e-16 2he2A 102 8.30e-16 1tp5A 119 1.01e-15 b.36.1.1 119305 2qg1A 92 1.03e-15 2iwnA 97 1.05e-15 2opgA 98 1.11e-15 2egoA 96 1.19e-15 2jikA 101 1.66e-15 1wf7A 103 1.77e-15 b.36.1.1 114577 2fneA 117 1.90e-15 b.36.1.1 133813 2awxA 105 1.93e-15 2he4A 90 2.07e-15 1n7eA 97 2.31e-15 b.36.1.1 91691 1pdr 99 2.44e-15 1qauA 112 2.52e-15 b.36.1.1 24779 2fe5A 94 2.80e-15 b.36.1.1 133323 1be9A 119 3.31e-15 b.36.1.1 24774 2f0aA 98 3.47e-15 b.36.1.1 132661 2i04A 85 3.70e-15 2ocsA 88 4.43e-15 2jilA 97 4.49e-15 1x45A 98 4.90e-15 b.36.1.1 121679 2q9vA 90 6.85e-15 2i1nA 102 7.11e-15 2gzvA 114 7.20e-15 2f5yA 91 7.36e-15 b.36.1.1 133015 2pa1A 87 8.32e-15 1i92A 91 1.13e-14 b.36.1.1 61990 1v5lA 103 1.25e-14 b.36.1.1 108378 2q3gA 89 1.39e-14 1qavA 90 1.40e-14 b.36.1.1 24777 1m5zA 91 1.72e-14 b.36.1.1 78676 1q3oA 109 2.06e-14 b.36.1.1 95700 1kwaA 88 3.63e-14 b.36.1.1 24772 2iwoA 120 4.20e-14 1fc6A 388 5.58e-14 b.36.1.3,c.14.1.2 64738,64739 2h3lA 103 5.73e-14 b.36.1.1 136046 2h2bA 107 8.13e-14 2vphA 100 8.74e-14 1nf3C 128 1.42e-13 b.36.1.1 85596 1ihjA 98 1.73e-13 b.36.1.1 62382 2fcfA 103 3.10e-13 b.36.1.1 133267 1b8qA 127 3.76e-13 b.36.1.1 24781 1mfgA 95 4.77e-13 b.36.1.1 79043 1r6jA 82 4.82e-13 b.36.1.1 97151 1l6oA 95 5.09e-13 b.36.1.1 84534 1qavB 115 8.32e-13 b.36.1.1 24780 2qkvA 96 1.57e-12 2rczA 81 2.02e-12 2reyA 100 4.18e-12 3bpuA 88 3.21e-11 1ky9A 448 3.49e-11 b.36.1.4,b.47.1.1 73198,73199 2p3wA 112 3.77e-09 1lcyA 325 1.04e-08 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 2.45e-08 b.36.1.4,b.47.1.1 112400,112401 2i6vA 87 3.11e-08 1y8tA 324 3.52e-08 b.36.1.4,b.47.1.1 122763,122764 1sotA 320 3.07e-07 b.36.1.4,b.47.1.1 105852,105853 1n6eA 1071 1.29e-05 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 2adzA 178 1.62e-05 b.55.1.1 126599 1k32A 1045 8.00e-05 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 0.000867 c.14.1.2 66425 1oroA 213 0.3845 c.61.1.1 34093 2ps1A 226 0.4739 2yzkA 178 0.5261 1y0bA 197 0.8380 c.61.1.1 122476 1rqpA 299 0.9711 b.141.1.1,c.132.1.1 97754,97755 1lh0A 213 1.242 c.61.1.1 73896 1ao0A 459 1.923 c.61.1.1,d.153.1.1 34049,41816 2g8oA 264 2.271 d.117.1.1 134779 2g8mA 264 2.388 2p1zA 180 3.075 2cw5A 255 3.192 1g0rA 293 3.315 c.68.1.6 34532 1ypvA 313 3.655 1ecfA 504 3.704 c.61.1.1,d.153.1.1 34053,41820 1zn8A 180 4.202 c.61.1.1 125376 1dekA 241 4.412 c.37.1.1 31842 2q6kA 283 5.126 1opr 213 6.435 2q07A 306 6.939 1vchA 175 7.018 c.61.1.1 119980 1vr5A 547 10.12 c.94.1.1 120437 1gph1 465 10.41 1yb2A 275 11.18 c.66.1.13 122868 2dy0A 190 11.26 1ev5A 264 12.73 d.117.1.1 40935 2igbA 179 13.64 1z7yA 322 13.87 c.79.1.1 124679 1l1qA 186 14.71 c.61.1.1 77653 1bkpA 278 18.16 d.117.1.1 41029 2nooA 502 19.39 1axwA 265 19.88 d.117.1.1 40938 2f4nA 273 21.26 1u9yA 284 22.49 c.61.1.2,c.61.1.2 119655,119656 2vesA 299 22.50 1eudA 311 24.32 c.2.1.8,c.23.4.1 30312,31140 1b02A 279 24.38 d.117.1.1 41035 1uc2A 481 25.53 d.261.1.1 99161 1aiqA 264 25.65 d.117.1.1 40967 3bkxA 275 26.15 1ta9A 450 27.62 1q33A 292 27.78 d.113.1.1 95657 2o7iA 592 28.52 1p16A 395 30.99 b.40.4.6,d.142.2.3 87661,87662 2tscA 264 33.65 d.117.1.1 40952 2d5wA 603 33.89 2yvaA 196 34.72 2go3A 267 36.19 d.14.1.7,d.14.1.7 135422,135423 1f6yA 262 37.95 c.1.21.2 29673 1o58A 303 38.28 c.79.1.1 92491 2guiA 194 39.64 c.55.3.5 135737 2bgxA 261 43.64 a.20.1.1,d.118.1.1 128504,128505 1evfA 264 43.96 d.117.1.1 40932 1f28A 297 44.09 d.117.1.1 59608 1wd5A 208 45.38 c.61.1.1 114524 2aeeA 211 49.79 c.61.1.1 126620 2plcA 274 50.35 c.1.18.2 29614 1qqqA 264 50.37 d.117.1.1 40931 1ckmA 330 51.79 b.40.4.6,d.142.2.3 25358,41585 1h5rA 293 52.53 c.68.1.6 65623 1fr3A 67 52.99 b.40.6.1 25436 1zq9A 285 54.76 c.66.1.24 125505 1qyrA 252 58.14 c.66.1.24 104657 1p5jA 372 58.83 c.79.1.1 104067 1dqpA 230 59.64 c.61.1.1 34069 1h4pA 408 59.88 c.1.8.3 90617 1j53A 186 60.91 c.55.3.5 77076 2scuA 288 61.88 c.2.1.8,c.23.4.1 30303,31131 1omoA 322 62.19 c.2.1.13 104017 2i71A 400 65.94 1ecfB 504 66.33 c.61.1.1,d.153.1.1 34054,41821 2epgA 487 67.92 2ikkA 173 71.28 1hvyA 288 73.99 d.117.1.1 41049 3ce9A 354 76.02 1m4yA 171 78.40 d.153.1.4 84802 1gsjA 258 78.55 c.73.1.2 70397 1xtmA 175 79.53 1b5eA 246 81.56 d.117.1.1 41056 1xtlA 175 81.71 1zgzA 122 84.60 c.23.1.1 125065 1h9jA 145 84.73 b.40.6.2,b.40.6.2 60829,60830 1xhfA 123 85.58 c.23.1.1 122003