# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ozfA 92 2.96e-16 1g9oA 91 7.44e-16 b.36.1.1 60400 2uzcA 88 1.10e-15 2he2A 102 1.28e-15 2eaqA 90 1.49e-15 2pktA 91 1.56e-15 1tp5A 119 1.73e-15 b.36.1.1 119305 2iwnA 97 1.79e-15 2qg1A 92 1.83e-15 2opgA 98 1.94e-15 2egoA 96 2.63e-15 1wf7A 103 3.15e-15 b.36.1.1 114577 2fneA 117 3.28e-15 b.36.1.1 133813 2jikA 101 3.41e-15 1pdr 99 3.47e-15 2he4A 90 3.67e-15 2awxA 105 3.75e-15 1n7eA 97 4.55e-15 b.36.1.1 91691 1qauA 112 4.73e-15 b.36.1.1 24779 1be9A 119 5.29e-15 b.36.1.1 24774 2fe5A 94 5.57e-15 b.36.1.1 133323 2i04A 85 7.36e-15 2jilA 97 8.35e-15 1x45A 98 8.93e-15 b.36.1.1 121679 2f0aA 98 9.56e-15 b.36.1.1 132661 2ocsA 88 9.75e-15 2i1nA 102 1.17e-14 2q9vA 90 1.26e-14 2pa1A 87 1.28e-14 2gzvA 114 1.42e-14 2f5yA 91 1.49e-14 b.36.1.1 133015 1qavA 90 2.07e-14 b.36.1.1 24777 1v5lA 103 2.29e-14 b.36.1.1 108378 1i92A 91 2.62e-14 b.36.1.1 61990 2q3gA 89 2.88e-14 1m5zA 91 3.20e-14 b.36.1.1 78676 1q3oA 109 4.31e-14 b.36.1.1 95700 2iwoA 120 5.49e-14 1kwaA 88 6.44e-14 b.36.1.1 24772 2h3lA 103 1.00e-13 b.36.1.1 136046 1fc6A 388 1.25e-13 b.36.1.3,c.14.1.2 64738,64739 2h2bA 107 1.26e-13 2vphA 100 1.57e-13 1nf3C 128 2.06e-13 b.36.1.1 85596 1ihjA 98 4.02e-13 b.36.1.1 62382 2fcfA 103 4.80e-13 b.36.1.1 133267 1b8qA 127 6.55e-13 b.36.1.1 24781 1mfgA 95 7.55e-13 b.36.1.1 79043 1r6jA 82 1.03e-12 b.36.1.1 97151 1l6oA 95 1.06e-12 b.36.1.1 84534 1qavB 115 1.45e-12 b.36.1.1 24780 2qkvA 96 2.14e-12 2rczA 81 3.31e-12 2reyA 100 7.39e-12 1ky9A 448 5.44e-11 b.36.1.4,b.47.1.1 73198,73199 3bpuA 88 5.59e-11 2p3wA 112 5.95e-09 1lcyA 325 1.42e-08 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 2.60e-08 b.36.1.4,b.47.1.1 112400,112401 2i6vA 87 4.45e-08 1y8tA 324 5.73e-08 b.36.1.4,b.47.1.1 122763,122764 1sotA 320 3.64e-07 b.36.1.4,b.47.1.1 105852,105853 1n6eA 1071 2.31e-05 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 2adzA 178 2.57e-05 b.55.1.1 126599 1k32A 1045 0.000141 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 0.001244 c.14.1.2 66425 1oroA 213 0.4033 c.61.1.1 34093 2yzkA 178 0.4037 2ps1A 226 0.4819 1y0bA 197 0.8834 c.61.1.1 122476 1rqpA 299 1.093 b.141.1.1,c.132.1.1 97754,97755 1lh0A 213 1.171 c.61.1.1 73896 1ao0A 459 2.363 c.61.1.1,d.153.1.1 34049,41816 2g8oA 264 2.598 d.117.1.1 134779 2g8mA 264 2.603 1ypvA 313 2.665 1zn8A 180 3.086 c.61.1.1 125376 2p1zA 180 3.397 1g0rA 293 3.881 c.68.1.6 34532 2cw5A 255 5.232 1ecfA 504 5.365 c.61.1.1,d.153.1.1 34053,41820 2q6kA 283 5.452 1dekA 241 6.237 c.37.1.1 31842 2dy0A 190 6.930 2q07A 306 7.645 1vchA 175 8.715 c.61.1.1 119980 1ev5A 264 9.242 d.117.1.1 40935 1opr 213 9.372 1vr5A 547 11.04 c.94.1.1 120437 1yb2A 275 11.55 c.66.1.13 122868 1l1qA 186 12.18 c.61.1.1 77653 1z7yA 322 13.92 c.79.1.1 124679 1gph1 465 14.60 2igbA 179 14.67 1bkpA 278 17.65 d.117.1.1 41029 1b02A 279 19.64 d.117.1.1 41035 1axwA 265 21.74 d.117.1.1 40938 1q33A 292 22.41 d.113.1.1 95657 1aiqA 264 23.04 d.117.1.1 40967 2nooA 502 24.68 2aeeA 211 25.34 c.61.1.1 126620 2vesA 299 26.32 2bgxA 261 26.89 a.20.1.1,d.118.1.1 128504,128505 1eudA 311 26.94 c.2.1.8,c.23.4.1 30312,31140 1f28A 297 29.76 d.117.1.1 59608 1u9yA 284 30.34 c.61.1.2,c.61.1.2 119655,119656 2d5wA 603 30.82 2tscA 264 31.26 d.117.1.1 40952 2guiA 194 31.28 c.55.3.5 135737 2o7iA 592 31.52 2f4nA 273 33.29 1uc2A 481 33.57 d.261.1.1 99161 1p16A 395 35.52 b.40.4.6,d.142.2.3 87661,87662 2yvaA 196 35.60 2go3A 267 36.50 d.14.1.7,d.14.1.7 135422,135423 1h5rA 293 36.61 c.68.1.6 65623 1ta9A 450 36.70 1evfA 264 37.16 d.117.1.1 40932 3bkxA 275 37.22 1qqqA 264 40.99 d.117.1.1 40931 1f6yA 262 43.03 c.1.21.2 29673 1j53A 186 46.19 c.55.3.5 77076 1ckmA 330 49.09 b.40.4.6,d.142.2.3 25358,41585 1hvyA 288 51.50 d.117.1.1 41049 1o58A 303 52.78 c.79.1.1 92491 1p5jA 372 59.75 c.79.1.1 104067 1zq9A 285 60.61 c.66.1.24 125505 1dqpA 230 60.95 c.61.1.1 34069 1wd5A 208 61.26 c.61.1.1 114524 2plcA 274 61.98 c.1.18.2 29614 2i71A 400 63.49 1omoA 322 66.60 c.2.1.13 104017 2scuA 288 66.73 c.2.1.8,c.23.4.1 30303,31131 1h4pA 408 68.40 c.1.8.3 90617 1b5eA 246 76.74 d.117.1.1 41056 1qyrA 252 77.67 c.66.1.24 104657 2bi0A 337 78.22 d.38.1.4,d.38.1.4 128565,128566 1zgzA 122 79.44 c.23.1.1 125065 2e7fA 262 80.77 2a9oA 120 82.44 c.23.1.1 126444 2epgA 487 82.46 1xhfA 123 82.73 c.23.1.1 122003 1fr3A 67 84.17 b.40.6.1 25436 1ipaA 274 87.46 c.116.1.1,d.79.3.3 71254,71255 1xtmA 175 88.07 1ecfB 504 89.24 c.61.1.1,d.153.1.1 34054,41821