# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ozfA	92	6.28e-12		
1g9oA	91	8.73e-12	b.36.1.1	60400
2uzcA	88	1.95e-11		
2opgA	98	2.02e-11		
2jikA	101	2.03e-11		
2fneA	117	2.04e-11	b.36.1.1	133813
2iwnA	97	2.09e-11		
2he2A	102	2.21e-11		
2fe5A	94	2.31e-11	b.36.1.1	133323
2qg1A	92	2.40e-11		
2awxA	105	2.81e-11		
2jilA	97	3.50e-11		
2pktA	91	3.82e-11		
1wf7A	103	4.20e-11	b.36.1.1	114577
1tp5A	119	4.29e-11	b.36.1.1	119305
2egoA	96	4.35e-11		
2i04A	85	5.11e-11		
2he4A	90	5.19e-11		
1qauA	112	5.91e-11	b.36.1.1	24779
1n7eA	97	5.96e-11	b.36.1.1	91691
1pdr	99	6.14e-11		
1i92A	91	6.14e-11	b.36.1.1	61990
2i1nA	102	6.19e-11		
2gzvA	114	6.70e-11		
2q9vA	90	7.26e-11		
1x45A	98	7.42e-11	b.36.1.1	121679
2eaqA	90	8.11e-11		
1be9A	119	9.73e-11	b.36.1.1	24774
2q3gA	89	1.11e-10		
1qavA	90	1.23e-10	b.36.1.1	24777
2f0aA	98	1.58e-10	b.36.1.1	132661
1q3oA	109	1.64e-10	b.36.1.1	95700
1m5zA	91	1.71e-10	b.36.1.1	78676
2f5yA	91	1.78e-10	b.36.1.1	133015
1v5lA	103	1.81e-10	b.36.1.1	108378
2ocsA	88	1.88e-10		
2iwoA	120	2.58e-10		
2h2bA	107	3.19e-10		
2pa1A	87	3.63e-10		
2h3lA	103	4.17e-10	b.36.1.1	136046
1kwaA	88	4.41e-10	b.36.1.1	24772
1nf3C	128	5.59e-10	b.36.1.1	85596
1ihjA	98	6.81e-10	b.36.1.1	62382
1b8qA	127	8.96e-10	b.36.1.1	24781
2fcfA	103	9.50e-10	b.36.1.1	133267
1l6oA	95	1.41e-09	b.36.1.1	84534
1mfgA	95	1.47e-09	b.36.1.1	79043
2vphA	100	1.80e-09		
1r6jA	82	1.88e-09	b.36.1.1	97151
1fc6A	388	2.24e-09	b.36.1.3,c.14.1.2	64738,64739
2qkvA	96	3.42e-09		
1qavB	115	4.13e-09	b.36.1.1	24780
2rczA	81	1.30e-08		
2reyA	100	2.97e-08		
3bpuA	88	5.40e-08		
1ky9A	448	1.43e-07	b.36.1.4,b.47.1.1	73198,73199
1lcyA	325	1.88e-06	b.36.1.4,b.47.1.1	73834,73835
2p3wA	112	2.46e-06		
1te0A	318	5.08e-06	b.36.1.4,b.47.1.1	112400,112401
2i6vA	87	6.99e-06		
1y8tA	324	8.65e-06	b.36.1.4,b.47.1.1	122763,122764
1sotA	320	2.33e-05	b.36.1.4,b.47.1.1	105852,105853
1n6eA	1071	0.002453	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	80149,80150,80151,80152
1k32A	1045	0.006966	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2adzA	178	0.01004	b.55.1.1	126599
1j7xA	302	0.8677	c.14.1.2	66425
2ps1A	226	7.051		
1oroA	213	7.199	c.61.1.1	34093
2q07A	306	15.11		
1ta9A	450	16.48		
1lh0A	213	21.07	c.61.1.1	73896
1rqpA	299	21.37	b.141.1.1,c.132.1.1	97754,97755
1dekA	241	24.45	c.37.1.1	31842
1opr	213	33.20		
1y0bA	197	34.51	c.61.1.1	122476
1ypvA	313	36.18		
1ckmA	330	36.77	b.40.4.6,d.142.2.3	25358,41585
2d9iA	96	37.46		
1dy2A	180	39.14	d.169.1.5	42451
1wj6A	101	40.85	d.15.2.2	114693
1z7yA	322	43.01	c.79.1.1	124679
1griA	217	43.32	b.34.2.1,b.34.2.1,d.93.1.1	24531,24532,40473
1g0rA	293	45.38	c.68.1.6	34532
3ce9A	354	46.22		
1as4A	341	49.64	e.1.1.1	42623
2cw5A	255	51.10		
1qlpA	394	51.30	e.1.1.1	42628
2q6kA	283	52.18		
2igbA	179	54.25		
2yzkA	178	54.63		
1p16A	395	55.10	b.40.4.6,d.142.2.3	87661,87662
2gn0A	342	60.36		
3bifA	468	63.67	c.37.1.7,c.60.1.4	31962,34008
2ek5A	129	67.73		
1uc2A	481	68.49	d.261.1.1	99161
1p5jA	372	70.93	c.79.1.1	104067
1ao0A	459	74.59	c.61.1.1,d.153.1.1	34049,41816
2guiA	194	75.03	c.55.3.5	135737
1mb4A	370	79.24	c.2.1.3,d.81.1.1	78908,78909
1pwhA	327	82.21	c.79.1.1	95224
1f6yA	262	85.78	c.1.21.2	29673