# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ozfA 92 5.83e-14 1g9oA 91 1.08e-13 b.36.1.1 60400 2uzcA 88 1.55e-13 2pktA 91 2.78e-13 2he2A 102 3.25e-13 2eaqA 90 3.51e-13 2iwnA 97 3.52e-13 2opgA 98 4.27e-13 1tp5A 119 4.43e-13 b.36.1.1 119305 2egoA 96 4.90e-13 1pdr 99 5.16e-13 2fneA 117 5.18e-13 b.36.1.1 133813 2he4A 90 5.47e-13 2awxA 105 5.93e-13 2qg1A 92 6.70e-13 1be9A 119 7.59e-13 b.36.1.1 24774 2jikA 101 7.83e-13 1wf7A 103 7.86e-13 b.36.1.1 114577 2jilA 97 8.20e-13 1qauA 112 9.52e-13 b.36.1.1 24779 2fe5A 94 1.07e-12 b.36.1.1 133323 2ocsA 88 1.11e-12 1n7eA 97 1.18e-12 b.36.1.1 91691 2i04A 85 1.37e-12 2i1nA 102 1.40e-12 1i92A 91 1.47e-12 b.36.1.1 61990 2f0aA 98 1.80e-12 b.36.1.1 132661 2q9vA 90 2.00e-12 2pa1A 87 2.19e-12 2q3gA 89 2.28e-12 1x45A 98 2.79e-12 b.36.1.1 121679 1qavA 90 2.84e-12 b.36.1.1 24777 2f5yA 91 3.08e-12 b.36.1.1 133015 2gzvA 114 3.27e-12 1v5lA 103 3.51e-12 b.36.1.1 108378 1q3oA 109 3.82e-12 b.36.1.1 95700 1m5zA 91 5.83e-12 b.36.1.1 78676 2iwoA 120 6.24e-12 1kwaA 88 9.23e-12 b.36.1.1 24772 2h3lA 103 1.22e-11 b.36.1.1 136046 1nf3C 128 1.36e-11 b.36.1.1 85596 2vphA 100 1.40e-11 2h2bA 107 1.41e-11 1fc6A 388 1.49e-11 b.36.1.3,c.14.1.2 64738,64739 1ihjA 98 3.23e-11 b.36.1.1 62382 2fcfA 103 4.29e-11 b.36.1.1 133267 1mfgA 95 7.52e-11 b.36.1.1 79043 2qkvA 96 8.46e-11 1b8qA 127 9.23e-11 b.36.1.1 24781 1r6jA 82 9.55e-11 b.36.1.1 97151 1l6oA 95 1.02e-10 b.36.1.1 84534 2rczA 81 2.26e-10 2reyA 100 2.69e-10 1qavB 115 2.74e-10 b.36.1.1 24780 3bpuA 88 1.49e-09 1ky9A 448 2.50e-09 b.36.1.4,b.47.1.1 73198,73199 2p3wA 112 1.59e-07 1lcyA 325 2.26e-07 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 4.38e-07 b.36.1.4,b.47.1.1 112400,112401 1y8tA 324 4.88e-07 b.36.1.4,b.47.1.1 122763,122764 2i6vA 87 1.00e-06 1sotA 320 4.27e-06 b.36.1.4,b.47.1.1 105852,105853 1n6eA 1071 7.11e-05 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 2adzA 178 7.81e-05 b.55.1.1 126599 1k32A 1045 0.000297 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 0.01147 c.14.1.2 66425 2ps1A 226 0.4929 1oroA 213 1.099 c.61.1.1 34093 2yzkA 178 1.458 1ao0A 459 2.290 c.61.1.1,d.153.1.1 34049,41816 1lh0A 213 2.352 c.61.1.1 73896 1y0bA 197 2.727 c.61.1.1 122476 1rqpA 299 3.793 b.141.1.1,c.132.1.1 97754,97755 2g8mA 264 4.517 2p1zA 180 4.573 2g8oA 264 4.661 d.117.1.1 134779 1g0rA 293 5.571 c.68.1.6 34532 2q6kA 283 5.854 1ypvA 313 6.025 2cw5A 255 6.342 1ecfA 504 7.259 c.61.1.1,d.153.1.1 34053,41820 1zn8A 180 7.974 c.61.1.1 125376 2dy0A 190 8.181 2igbA 179 9.082 1dekA 241 10.62 c.37.1.1 31842 1vchA 175 11.42 c.61.1.1 119980 1gph1 465 11.70 1opr 213 13.27 2vesA 299 13.80 2aeeA 211 14.27 c.61.1.1 126620 2f4nA 273 15.41 2q07A 306 18.00 1eudA 311 19.77 c.2.1.8,c.23.4.1 30312,31140 1z7yA 322 21.85 c.79.1.1 124679 1p16A 395 23.78 b.40.4.6,d.142.2.3 87661,87662 1vr5A 547 24.65 c.94.1.1 120437 1ev5A 264 24.71 d.117.1.1 40935 1q33A 292 25.98 d.113.1.1 95657 1l1qA 186 28.91 c.61.1.1 77653 1h5rA 293 30.59 c.68.1.6 65623 1ckmA 330 32.24 b.40.4.6,d.142.2.3 25358,41585 2go3A 267 33.38 d.14.1.7,d.14.1.7 135422,135423 1o58A 303 34.51 c.79.1.1 92491 1b02A 279 38.56 d.117.1.1 41035 3bkxA 275 39.14 1u9yA 284 40.20 c.61.1.2,c.61.1.2 119655,119656 1bkpA 278 40.50 d.117.1.1 41029 1uc2A 481 40.66 d.261.1.1 99161 1g2qA 187 40.99 c.61.1.1 65117 1axwA 265 45.04 d.117.1.1 40938 1f28A 297 45.69 d.117.1.1 59608 2scuA 288 47.75 c.2.1.8,c.23.4.1 30303,31131 1ta9A 450 47.84 2i71A 400 47.85 1aiqA 264 49.36 d.117.1.1 40967 1f6yA 262 50.26 c.1.21.2 29673 2e7fA 262 55.41 2yvaA 196 58.42 1pt6A 213 59.13 c.62.1.1 95091 2guiA 194 60.66 c.55.3.5 135737 2tscA 264 62.06 d.117.1.1 40952 1omoA 322 71.08 c.2.1.13 104017 1wd5A 208 72.46 c.61.1.1 114524 2plcA 274 74.63 c.1.18.2 29614 3bs5A 106 76.99 3bs5B 80 77.77 1j53A 186 80.35 c.55.3.5 77076 1evfA 264 81.97 d.117.1.1 40932 1qqqA 264 82.08 d.117.1.1 40931 1l2tA 235 82.37 c.37.1.12 73514 1fxoA 293 82.70 c.68.1.6 34524 2epgA 487 83.34 2uwaA 274 84.29 1ecfB 504 87.99 c.61.1.1,d.153.1.1 34054,41821 1p5jA 372 88.85 c.79.1.1 104067 2jbhA 225 89.80