# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ozfA 92 3.60e-16 2he2A 102 7.62e-16 2eaqA 90 8.32e-16 1g9oA 91 9.97e-16 b.36.1.1 60400 2pktA 91 1.18e-15 2uzcA 88 2.39e-15 2he4A 90 3.36e-15 1wf7A 103 5.27e-15 b.36.1.1 114577 2iwnA 97 5.39e-15 2egoA 96 6.01e-15 1tp5A 119 6.90e-15 b.36.1.1 119305 2opgA 98 7.62e-15 2qg1A 92 8.42e-15 2jilA 97 1.02e-14 1pdr 99 1.09e-14 2awxA 105 1.17e-14 2ocsA 88 1.25e-14 2jikA 101 1.44e-14 1m5zA 91 1.63e-14 b.36.1.1 78676 1qauA 112 1.68e-14 b.36.1.1 24779 1n7eA 97 1.89e-14 b.36.1.1 91691 2fe5A 94 2.11e-14 b.36.1.1 133323 1qavA 90 2.12e-14 b.36.1.1 24777 1i92A 91 2.39e-14 b.36.1.1 61990 2i04A 85 3.05e-14 2i1nA 102 3.23e-14 2pa1A 87 4.65e-14 2gzvA 114 4.81e-14 1x45A 98 4.88e-14 b.36.1.1 121679 2q9vA 90 4.99e-14 2f5yA 91 5.01e-14 b.36.1.1 133015 1be9A 119 5.06e-14 b.36.1.1 24774 1kwaA 88 5.33e-14 b.36.1.1 24772 2q3gA 89 6.09e-14 1q3oA 109 8.85e-14 b.36.1.1 95700 1v5lA 103 9.93e-14 b.36.1.1 108378 2fneA 117 1.08e-13 b.36.1.1 133813 2iwoA 120 1.36e-13 2f0aA 98 1.88e-13 b.36.1.1 132661 2h3lA 103 3.14e-13 b.36.1.1 136046 2vphA 100 3.86e-13 2h2bA 107 4.15e-13 1ihjA 98 7.06e-13 b.36.1.1 62382 2fcfA 103 1.54e-12 b.36.1.1 133267 1nf3C 128 1.60e-12 b.36.1.1 85596 1mfgA 95 1.98e-12 b.36.1.1 79043 1qavB 115 2.12e-12 b.36.1.1 24780 2qkvA 96 2.22e-12 1r6jA 82 2.63e-12 b.36.1.1 97151 1b8qA 127 2.68e-12 b.36.1.1 24781 2reyA 100 5.06e-12 1l6oA 95 5.16e-12 b.36.1.1 84534 2rczA 81 9.85e-12 3bpuA 88 5.42e-11 1fc6A 388 1.99e-10 b.36.1.3,c.14.1.2 64738,64739 1lcyA 325 6.24e-09 b.36.1.4,b.47.1.1 73834,73835 2p3wA 112 2.65e-08 2i6vA 87 1.98e-07 1ky9A 448 2.69e-07 b.36.1.4,b.47.1.1 73198,73199 1te0A 318 1.34e-06 b.36.1.4,b.47.1.1 112400,112401 2adzA 178 2.43e-05 b.55.1.1 126599 1y8tA 324 8.91e-05 b.36.1.4,b.47.1.1 122763,122764 1sotA 320 0.000157 b.36.1.4,b.47.1.1 105852,105853 1j7xA 302 0.007764 c.14.1.2 66425 2aeeA 211 0.5143 c.61.1.1 126620 2ps1A 226 0.7655 1rqpA 299 0.7659 b.141.1.1,c.132.1.1 97754,97755 2yzkA 178 1.102 1y0bA 197 1.372 c.61.1.1 122476 1vchA 175 1.676 c.61.1.1 119980 2f4nA 273 2.194 1z7yA 322 2.283 c.79.1.1 124679 1l1qA 186 2.368 c.61.1.1 77653 1se8A 301 3.682 b.40.4.3 105448 2epgA 487 4.390 1zn8A 180 5.420 c.61.1.1 125376 2p1zA 180 5.478 1k32A 1045 6.576 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2zbvA 263 6.751 1vhoA 346 6.873 b.49.3.1,c.56.5.4 100694,100695 1gq2A 555 8.021 c.2.1.7,c.58.1.3 70308,70309 2bi0A 337 11.58 d.38.1.4,d.38.1.4 128565,128566 1eudA 311 14.45 c.2.1.8,c.23.4.1 30312,31140 1p2fA 220 14.87 a.4.6.1,c.23.1.1 87720,87721 1ti6A 875 15.30 b.52.2.2,c.81.1.1 106974,106975 2hldD 478 15.38 2q07A 306 15.79 2o7iA 592 15.89 1dgmA 363 17.53 c.72.1.1 34936 2imjA 166 19.42 1lh0A 213 20.73 c.61.1.1 73896 1lam 484 22.32 1bg1A 722 22.60 a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 3bilA 348 23.06 1j7jA 178 23.25 c.61.1.1 84131 2dy0A 190 24.65 2pfsA 150 25.99 2r3uA 211 26.54 1xiyA 182 26.92 c.47.1.10 122022 2qytA 317 26.98 3bpkA 206 28.04 2hdhA 293 29.26 a.100.1.3,c.2.1.6 18795,30199 2z7bA 270 32.20 1uv4A 293 32.49 b.67.2.1 119705 2dznA 228 33.62 2qh9A 184 34.55 1p16A 395 34.82 b.40.4.6,d.142.2.3 87661,87662 1ecfA 504 37.01 c.61.1.1,d.153.1.1 34053,41820 1ih7A 903 37.42 c.55.3.5,e.8.1.1 62375,62376 3vubA 101 37.77 b.34.6.1 24613 1y791 680 37.89 2guiA 194 40.02 c.55.3.5 135737 1b5eA 246 41.43 d.117.1.1 41056 1atgA 231 41.64 c.94.1.1 35834 1qa1A 554 41.87 b.80.1.6 28047 1hkkA 364 42.47 c.1.8.5,d.26.3.1 90634,90635 1dy2A 180 42.53 d.169.1.5 42451 1yvkA 163 43.30 d.108.1.1 124101 1euiA 228 43.46 c.18.1.1 31028 3bcvA 240 45.06 1wb0A 445 45.21 c.1.8.5,d.26.3.1 120825,120826 2ikkA 173 46.12 2vesA 299 48.24 1u9yA 284 48.24 c.61.1.2,c.61.1.2 119655,119656 1v58A 241 48.90 c.47.1.9,d.17.3.1 108371,108372 1h5rA 293 48.90 c.68.1.6 65623 3bkxA 275 49.15 2h8uA 65 49.22 g.7.1.1 136246 1m2tB 263 49.64 b.42.2.1,b.42.2.1 84762,84763 1agjA 242 50.40 b.47.1.1 25827 2ivfC 214 51.26 1ss3A 50 51.34 g.2.3.1 105975 1jmvA 141 52.33 c.26.2.4 66897 1zu0A 529 52.71 2pcqA 283 57.26 1j53A 186 57.43 c.55.3.5 77076 1gph1 465 57.48 2go3A 267 59.10 d.14.1.7,d.14.1.7 135422,135423 1r62A 160 60.77 d.122.1.3 104816 1pieA 419 61.38 d.14.1.5,d.58.26.7 94706,94707 1xahA 354 61.41 1jdwA 423 61.45 d.126.1.2 41129 1p5jA 372 62.94 c.79.1.1 104067 1omoA 322 64.33 c.2.1.13 104017 2uwaA 274 66.51 1cf2O 337 66.59 c.2.1.3,d.81.1.1 29994,39909 1xtlA 175 67.20 2c40A 312 68.99 1h6kX 97 69.24 d.58.7.1 60684 1aiqA 264 71.75 d.117.1.1 40967 1zcjA 463 71.79 1qisA 396 72.81 c.67.1.1 34284 1qo8A 566 73.66 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2p19A 149 76.83 1h7xA 1025 76.92 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15687,28632,30328,30613,39011 2bklA 695 77.15 1g8aA 227 77.22 c.66.1.3 90506 2absA 383 79.47 c.72.1.1 126534 1pwhA 327 81.16 c.79.1.1 95224 3b9gA 328 81.21 1o57A 291 82.74 a.4.5.40,c.61.1.1 92483,92484 1dbyA 107 83.09 c.47.1.1 32734 1arhA 396 83.46 c.67.1.1 34321 1cvjA 190 83.48 d.58.7.1,d.58.7.1 39191,39192 1xadA 345 83.82 c.77.1.1 35055 1ev5A 264 84.10 d.117.1.1 40935 1vq0A 302 84.83 d.193.1.1,g.81.1.1 114000,114001 1v0aA 178 86.14 b.18.1.30 119815 2yvaA 196 86.84 1j79A 347 86.88 c.1.9.4 62675 2z5bB 179 87.23 1yppA 286 89.05 b.40.5.1 25407 1dnvA 437 89.17 b.121.5.3 23332