# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ozfA 92 1.80e-13 1g9oA 91 4.15e-13 b.36.1.1 60400 2uzcA 88 5.71e-13 2pktA 91 8.65e-13 2iwnA 97 9.77e-13 2he2A 102 1.10e-12 2eaqA 90 1.20e-12 2he4A 90 1.34e-12 2opgA 98 1.37e-12 1tp5A 119 1.42e-12 b.36.1.1 119305 2egoA 96 1.56e-12 1pdr 99 1.57e-12 2fneA 117 1.58e-12 b.36.1.1 133813 2awxA 105 1.68e-12 2qg1A 92 1.83e-12 2jikA 101 2.08e-12 1wf7A 103 2.33e-12 b.36.1.1 114577 1be9A 119 2.39e-12 b.36.1.1 24774 2fe5A 94 2.64e-12 b.36.1.1 133323 1qauA 112 2.73e-12 b.36.1.1 24779 2jilA 97 2.75e-12 2ocsA 88 3.22e-12 1n7eA 97 3.35e-12 b.36.1.1 91691 2i1nA 102 4.06e-12 2i04A 85 4.18e-12 1i92A 91 5.43e-12 b.36.1.1 61990 2f0aA 98 5.44e-12 b.36.1.1 132661 1x45A 98 5.61e-12 b.36.1.1 121679 2q9vA 90 6.29e-12 2pa1A 87 7.26e-12 2f5yA 91 7.50e-12 b.36.1.1 133015 2q3gA 89 7.70e-12 1qavA 90 8.15e-12 b.36.1.1 24777 2gzvA 114 8.17e-12 1v5lA 103 1.03e-11 b.36.1.1 108378 1q3oA 109 1.17e-11 b.36.1.1 95700 2iwoA 120 1.82e-11 1m5zA 91 1.88e-11 b.36.1.1 78676 1kwaA 88 2.54e-11 b.36.1.1 24772 2h3lA 103 2.87e-11 b.36.1.1 136046 2h2bA 107 3.26e-11 1nf3C 128 3.55e-11 b.36.1.1 85596 2vphA 100 4.37e-11 1fc6A 388 5.21e-11 b.36.1.3,c.14.1.2 64738,64739 1ihjA 98 7.50e-11 b.36.1.1 62382 2fcfA 103 9.51e-11 b.36.1.1 133267 1mfgA 95 1.38e-10 b.36.1.1 79043 1b8qA 127 1.68e-10 b.36.1.1 24781 1r6jA 82 2.24e-10 b.36.1.1 97151 2qkvA 96 2.69e-10 1l6oA 95 3.09e-10 b.36.1.1 84534 1qavB 115 5.21e-10 b.36.1.1 24780 2rczA 81 5.79e-10 2reyA 100 7.13e-10 3bpuA 88 2.10e-09 1ky9A 448 4.89e-09 b.36.1.4,b.47.1.1 73198,73199 2p3wA 112 4.84e-07 1te0A 318 9.56e-07 b.36.1.4,b.47.1.1 112400,112401 1lcyA 325 1.36e-06 b.36.1.4,b.47.1.1 73834,73835 1y8tA 324 1.62e-06 b.36.1.4,b.47.1.1 122763,122764 2i6vA 87 4.14e-06 1sotA 320 7.95e-06 b.36.1.4,b.47.1.1 105852,105853 2adzA 178 7.23e-05 b.55.1.1 126599 1n6eA 1071 0.000227 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1k32A 1045 0.000924 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 0.01341 c.14.1.2 66425 2ps1A 226 0.8194 1oroA 213 1.031 c.61.1.1 34093 2yzkA 178 1.144 1y0bA 197 2.187 c.61.1.1 122476 1lh0A 213 2.971 c.61.1.1 73896 2p1zA 180 6.008 1ao0A 459 6.347 c.61.1.1,d.153.1.1 34049,41816 1g0rA 293 6.511 c.68.1.6 34532 2g8mA 264 6.663 2g8oA 264 6.783 d.117.1.1 134779 1ypvA 313 7.672 1rqpA 299 8.418 b.141.1.1,c.132.1.1 97754,97755 2igbA 179 11.08 1zn8A 180 11.19 c.61.1.1 125376 2dy0A 190 11.77 2q07A 306 12.18 1vchA 175 12.50 c.61.1.1 119980 1ecfA 504 12.65 c.61.1.1,d.153.1.1 34053,41820 1dekA 241 13.51 c.37.1.1 31842 2q6kA 283 13.55 2aeeA 211 14.79 c.61.1.1 126620 2cw5A 255 16.79 1opr 213 17.93 1vr5A 547 19.13 c.94.1.1 120437 1q33A 292 19.37 d.113.1.1 95657 2vesA 299 21.53 1z7yA 322 22.04 c.79.1.1 124679 1eudA 311 26.85 c.2.1.8,c.23.4.1 30312,31140 1l1qA 186 27.95 c.61.1.1 77653 1ev5A 264 27.97 d.117.1.1 40935 2plcA 274 33.40 c.1.18.2 29614 1h5rA 293 37.23 c.68.1.6 65623 1gph1 465 37.32 3bkxA 275 40.91 2guiA 194 44.63 c.55.3.5 135737 2f4nA 273 45.66 2go3A 267 48.55 d.14.1.7,d.14.1.7 135422,135423 1b02A 279 52.11 d.117.1.1 41035 1u9yA 284 53.32 c.61.1.2,c.61.1.2 119655,119656 1g2qA 187 56.06 c.61.1.1 65117 1j53A 186 57.24 c.55.3.5 77076 1uc2A 481 58.41 d.261.1.1 99161 1axwA 265 58.92 d.117.1.1 40938 1p16A 395 59.46 b.40.4.6,d.142.2.3 87661,87662 1aiqA 264 60.59 d.117.1.1 40967 2e7fA 262 64.33 1o58A 303 64.81 c.79.1.1 92491 1f28A 297 65.31 d.117.1.1 59608 1ta9A 450 65.55 1dy2A 180 67.71 d.169.1.5 42451 1bkpA 278 69.21 d.117.1.1 41029 2scuA 288 69.87 c.2.1.8,c.23.4.1 30303,31131 1wd5A 208 70.68 c.61.1.1 114524 3bs5B 80 71.87 1m4yA 171 76.34 d.153.1.4 84802 1f6yA 262 76.70 c.1.21.2 29673 2bgxA 261 78.15 a.20.1.1,d.118.1.1 128504,128505 2tscA 264 78.81 d.117.1.1 40952 1pt6A 213 79.69 c.62.1.1 95091 1fxoA 293 80.09 c.68.1.6 34524 2i71A 400 80.51 3bs5A 106 80.63 1yb2A 275 82.87 c.66.1.13 122868 1q7zA 566 86.22 c.1.21.2,c.1.26.1 96090,96091 2d5wA 603 86.52 2jbhA 225 86.60 1evfA 264 89.10 d.117.1.1 40932 1p5jA 372 89.71 c.79.1.1 104067