# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ozfA	92	4.29e-13		
1g9oA	91	9.58e-13	b.36.1.1	60400
2uzcA	88	1.23e-12		
2eaqA	90	1.30e-12		
2he2A	102	1.51e-12		
2pktA	91	1.66e-12		
1wf7A	103	1.98e-12	b.36.1.1	114577
2iwnA	97	2.13e-12		
2opgA	98	2.38e-12		
2egoA	96	2.45e-12		
1tp5A	119	2.49e-12	b.36.1.1	119305
2qg1A	92	2.67e-12		
1pdr	99	2.68e-12		
2jikA	101	2.95e-12		
2awxA	105	3.28e-12		
2he4A	90	3.30e-12		
1qauA	112	3.84e-12	b.36.1.1	24779
2fneA	117	3.86e-12	b.36.1.1	133813
1n7eA	97	3.95e-12	b.36.1.1	91691
1x45A	98	4.08e-12	b.36.1.1	121679
2jilA	97	4.39e-12		
2fe5A	94	4.67e-12	b.36.1.1	133323
2f0aA	98	4.75e-12	b.36.1.1	132661
2i04A	85	5.43e-12		
1be9A	119	5.75e-12	b.36.1.1	24774
2q9vA	90	6.03e-12		
2ocsA	88	6.67e-12		
2i1nA	102	7.73e-12		
2pa1A	87	9.32e-12		
1v5lA	103	1.05e-11	b.36.1.1	108378
2gzvA	114	1.07e-11		
1qavA	90	1.13e-11	b.36.1.1	24777
2f5yA	91	1.36e-11	b.36.1.1	133015
1m5zA	91	1.38e-11	b.36.1.1	78676
1i92A	91	1.65e-11	b.36.1.1	61990
2q3gA	89	1.68e-11		
1q3oA	109	2.12e-11	b.36.1.1	95700
2iwoA	120	3.07e-11		
1kwaA	88	3.61e-11	b.36.1.1	24772
2vphA	100	6.15e-11		
2h3lA	103	6.19e-11	b.36.1.1	136046
1fc6A	388	6.78e-11	b.36.1.3,c.14.1.2	64738,64739
2h2bA	107	7.74e-11		
1nf3C	128	9.46e-11	b.36.1.1	85596
1b8qA	127	1.51e-10	b.36.1.1	24781
2fcfA	103	1.69e-10	b.36.1.1	133267
1ihjA	98	2.55e-10	b.36.1.1	62382
1mfgA	95	2.76e-10	b.36.1.1	79043
1r6jA	82	3.09e-10	b.36.1.1	97151
1l6oA	95	3.52e-10	b.36.1.1	84534
2qkvA	96	4.97e-10		
1qavB	115	5.23e-10	b.36.1.1	24780
2rczA	81	6.75e-10		
2reyA	100	7.83e-10		
3bpuA	88	3.83e-09		
1ky9A	448	6.13e-09	b.36.1.4,b.47.1.1	73198,73199
2p3wA	112	9.79e-07		
1te0A	318	1.71e-06	b.36.1.4,b.47.1.1	112400,112401
1lcyA	325	2.45e-06	b.36.1.4,b.47.1.1	73834,73835
1y8tA	324	2.93e-06	b.36.1.4,b.47.1.1	122763,122764
2i6vA	87	6.33e-06		
1sotA	320	7.93e-06	b.36.1.4,b.47.1.1	105852,105853
2adzA	178	9.85e-05	b.55.1.1	126599
1n6eA	1071	0.001332	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	80149,80150,80151,80152
1k32A	1045	0.003146	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.004716	c.14.1.2	66425
1oroA	213	1.991	c.61.1.1	34093
2ps1A	226	2.407		
1lh0A	213	4.213	c.61.1.1	73896
1ao0A	459	5.274	c.61.1.1,d.153.1.1	34049,41816
1rqpA	299	5.340	b.141.1.1,c.132.1.1	97754,97755
2g8mA	264	7.595		
1ypvA	313	7.610		
2g8oA	264	7.658	d.117.1.1	134779
1opr	213	7.832		
1y0bA	197	9.408	c.61.1.1	122476
2yzkA	178	9.759		
2p1zA	180	11.77		
2q07A	306	13.34		
2q6kA	283	14.38		
2cw5A	255	15.66		
1dekA	241	16.16	c.37.1.1	31842
1ev5A	264	16.42	d.117.1.1	40935
1g0rA	293	16.73	c.68.1.6	34532
1f28A	297	17.77	d.117.1.1	59608
2igbA	179	18.85		
1z7yA	322	21.44	c.79.1.1	124679
2vesA	299	22.56		
1ecfA	504	22.88	c.61.1.1,d.153.1.1	34053,41820
1vr5A	547	23.13	c.94.1.1	120437
1b02A	279	25.74	d.117.1.1	41035
1vchA	175	26.93	c.61.1.1	119980
1bkpA	278	28.90	d.117.1.1	41029
1p5jA	372	33.62	c.79.1.1	104067
1q33A	292	34.52	d.113.1.1	95657
1ta9A	450	37.74		
1gph1	465	39.92		
2go3A	267	40.24	d.14.1.7,d.14.1.7	135422,135423
2f4nA	273	45.73		
2bgxA	261	45.81	a.20.1.1,d.118.1.1	128504,128505
1axwA	265	46.16	d.117.1.1	40938
1aiqA	264	46.26	d.117.1.1	40967
2plcA	274	50.80	c.1.18.2	29614
1pwhA	327	50.80	c.79.1.1	95224
2d5wA	603	52.42		
1evfA	264	52.93	d.117.1.1	40932
1eudA	311	54.40	c.2.1.8,c.23.4.1	30312,31140
1qqqA	264	55.90	d.117.1.1	40931
1yb2A	275	58.64	c.66.1.13	122868
1zn8A	180	59.91	c.61.1.1	125376
2guiA	194	61.11	c.55.3.5	135737
1m4yA	171	63.71	d.153.1.4	84802
2scuA	288	65.99	c.2.1.8,c.23.4.1	30303,31131
2tscA	264	68.68	d.117.1.1	40952
1u9yA	284	72.44	c.61.1.2,c.61.1.2	119655,119656
1dy2A	180	72.88	d.169.1.5	42451
1wd5A	208	74.06	c.61.1.1	114524
2dy0A	190	74.11		
2nooA	502	75.86		
1uc2A	481	76.21	d.261.1.1	99161
1ryaA	160	79.11	d.113.1.5	105122
1l1qA	186	79.13	c.61.1.1	77653
3bkxA	275	84.52		
1j53A	186	85.58	c.55.3.5	77076
2i06A	309	85.87		
1xahA	354	86.53		
1fr3A	67	87.54	b.40.6.1	25436
2gn0A	342	89.41