# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ozfA	92	8.31e-10		
1g9oA	91	1.51e-09	b.36.1.1	60400
2uzcA	88	1.74e-09		
2iwnA	97	1.84e-09		
2fneA	117	1.92e-09	b.36.1.1	133813
2opgA	98	1.99e-09		
1wf7A	103	2.01e-09	b.36.1.1	114577
2jikA	101	2.16e-09		
2pktA	91	2.22e-09		
2he2A	102	2.34e-09		
2fe5A	94	2.49e-09	b.36.1.1	133323
2awxA	105	2.67e-09		
1pdr	99	2.76e-09		
1n7eA	97	3.08e-09	b.36.1.1	91691
2jilA	97	3.44e-09		
2i1nA	102	3.45e-09		
2qg1A	92	3.76e-09		
1tp5A	119	4.38e-09	b.36.1.1	119305
2he4A	90	4.79e-09		
2egoA	96	4.99e-09		
2eaqA	90	5.23e-09		
2q9vA	90	7.45e-09		
2gzvA	114	7.55e-09		
1x45A	98	8.65e-09	b.36.1.1	121679
1v5lA	103	9.76e-09	b.36.1.1	108378
1m5zA	91	1.04e-08	b.36.1.1	78676
1be9A	119	1.09e-08	b.36.1.1	24774
2q3gA	89	1.20e-08		
2pa1A	87	1.20e-08		
2i04A	85	1.21e-08		
2f0aA	98	1.37e-08	b.36.1.1	132661
2ocsA	88	1.37e-08		
1i92A	91	1.38e-08	b.36.1.1	61990
1qavA	90	1.59e-08	b.36.1.1	24777
2iwoA	120	1.90e-08		
1q3oA	109	1.94e-08	b.36.1.1	95700
1qauA	112	2.21e-08	b.36.1.1	24779
1kwaA	88	2.56e-08	b.36.1.1	24772
2h2bA	107	2.68e-08		
2h3lA	103	3.02e-08	b.36.1.1	136046
2f5yA	91	3.04e-08	b.36.1.1	133015
2vphA	100	4.69e-08		
2fcfA	103	5.22e-08	b.36.1.1	133267
1mfgA	95	6.49e-08	b.36.1.1	79043
1l6oA	95	7.10e-08	b.36.1.1	84534
1nf3C	128	1.43e-07	b.36.1.1	85596
1fc6A	388	1.56e-07	b.36.1.3,c.14.1.2	64738,64739
1b8qA	127	1.83e-07	b.36.1.1	24781
1r6jA	82	1.87e-07	b.36.1.1	97151
2qkvA	96	2.53e-07		
1ihjA	98	6.90e-07	b.36.1.1	62382
1qavB	115	9.51e-07	b.36.1.1	24780
2reyA	100	1.42e-06		
3bpuA	88	2.73e-06		
1ky9A	448	3.67e-06	b.36.1.4,b.47.1.1	73198,73199
2rczA	81	4.58e-06		
2p3wA	112	4.93e-05		
1lcyA	325	8.97e-05	b.36.1.4,b.47.1.1	73834,73835
1te0A	318	0.000155	b.36.1.4,b.47.1.1	112400,112401
2i6vA	87	0.000317		
1y8tA	324	0.000362	b.36.1.4,b.47.1.1	122763,122764
1sotA	320	0.000400	b.36.1.4,b.47.1.1	105852,105853
1n6eA	1071	0.1074	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	80149,80150,80151,80152
1k32A	1045	0.1660	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.1673	c.14.1.2	66425
2adzA	178	0.1942	b.55.1.1	126599
2q07A	306	16.84		
1oroA	213	26.16	c.61.1.1	34093
1rqpA	299	26.77	b.141.1.1,c.132.1.1	97754,97755
1dy2A	180	31.16	d.169.1.5	42451
2cw5A	255	33.21		
1ta9A	450	45.40		
1ckmA	330	55.91	b.40.4.6,d.142.2.3	25358,41585
1wj6A	101	60.46	d.15.2.2	114693
2guiA	194	70.73	c.55.3.5	135737
3bifA	468	73.36	c.37.1.7,c.60.1.4	31962,34008
1vs0A	310	73.47		
1i8oA	114	75.63	a.3.1.1	61979
1q33A	292	77.70	d.113.1.1	95657
1ypvA	313	80.25		
1j53A	186	83.40	c.55.3.5	77076
1koe	172	85.85		
2ywkA	95	89.88