# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ozfA	92	1.68e-12		
1g9oA	91	3.26e-12	b.36.1.1	60400
2he2A	102	4.20e-12		
2qg1A	92	6.16e-12		
2iwnA	97	6.46e-12		
2uzcA	88	6.68e-12		
1tp5A	119	7.93e-12	b.36.1.1	119305
1pdr	99	7.94e-12		
2fneA	117	8.24e-12	b.36.1.1	133813
2opgA	98	8.44e-12		
2jilA	97	8.71e-12		
2awxA	105	9.04e-12		
2he4A	90	9.20e-12		
2jikA	101	9.67e-12		
2egoA	96	1.05e-11		
2pktA	91	1.21e-11		
1wf7A	103	1.39e-11	b.36.1.1	114577
1n7eA	97	1.66e-11	b.36.1.1	91691
2fe5A	94	1.69e-11	b.36.1.1	133323
1be9A	119	1.77e-11	b.36.1.1	24774
2eaqA	90	1.89e-11		
1qavA	90	2.05e-11	b.36.1.1	24777
2gzvA	114	2.18e-11		
2i1nA	102	2.34e-11		
1x45A	98	3.21e-11	b.36.1.1	121679
1qauA	112	3.29e-11	b.36.1.1	24779
1m5zA	91	4.46e-11	b.36.1.1	78676
2q9vA	90	4.64e-11		
2i04A	85	4.67e-11		
1i92A	91	4.94e-11	b.36.1.1	61990
1q3oA	109	5.24e-11	b.36.1.1	95700
2pa1A	87	5.64e-11		
2q3gA	89	6.60e-11		
2h2bA	107	6.71e-11		
1nf3C	128	6.83e-11	b.36.1.1	85596
2ocsA	88	6.93e-11		
1v5lA	103	6.96e-11	b.36.1.1	108378
2f0aA	98	7.23e-11	b.36.1.1	132661
2iwoA	120	9.91e-11		
2h3lA	103	1.22e-10	b.36.1.1	136046
1kwaA	88	1.38e-10	b.36.1.1	24772
2f5yA	91	2.08e-10	b.36.1.1	133015
2vphA	100	3.81e-10		
1ihjA	98	3.99e-10	b.36.1.1	62382
1l6oA	95	4.23e-10	b.36.1.1	84534
2fcfA	103	4.27e-10	b.36.1.1	133267
1fc6A	388	5.35e-10	b.36.1.3,c.14.1.2	64738,64739
1b8qA	127	6.17e-10	b.36.1.1	24781
2qkvA	96	6.94e-10		
1mfgA	95	8.46e-10	b.36.1.1	79043
1r6jA	82	2.43e-09	b.36.1.1	97151
1qavB	115	3.89e-09	b.36.1.1	24780
2reyA	100	1.01e-08		
2rczA	81	1.84e-08		
3bpuA	88	3.33e-08		
1ky9A	448	1.70e-07	b.36.1.4,b.47.1.1	73198,73199
2p3wA	112	2.17e-06		
1lcyA	325	3.66e-06	b.36.1.4,b.47.1.1	73834,73835
2i6vA	87	6.44e-06		
1te0A	318	1.81e-05	b.36.1.4,b.47.1.1	112400,112401
1y8tA	324	6.22e-05	b.36.1.4,b.47.1.1	122763,122764
1sotA	320	0.000197	b.36.1.4,b.47.1.1	105852,105853
1n6eA	1071	0.005663	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	80149,80150,80151,80152
1k32A	1045	0.01497	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2adzA	178	0.02670	b.55.1.1	126599
1j7xA	302	0.04582	c.14.1.2	66425
1oroA	213	2.043	c.61.1.1	34093
1lh0A	213	3.699	c.61.1.1	73896
1rqpA	299	5.551	b.141.1.1,c.132.1.1	97754,97755
1opr	213	6.387		
2ps1A	226	9.078		
2g8mA	264	12.71		
1ecfA	504	15.34	c.61.1.1,d.153.1.1	34053,41820
2g8oA	264	16.09	d.117.1.1	134779
1dekA	241	17.10	c.37.1.1	31842
2q07A	306	17.80		
1ypvA	313	19.16		
2p1zA	180	24.37		
1ao0A	459	24.60	c.61.1.1,d.153.1.1	34049,41816
1xm7A	195	25.02	d.159.1.8	115473
1f28A	297	25.35	d.117.1.1	59608
2cw5A	255	25.85		
1g0rA	293	26.12	c.68.1.6	34532
1pt6A	213	28.86	c.62.1.1	95091
1ev5A	264	30.53	d.117.1.1	40935
1b02A	279	30.98	d.117.1.1	41035
1h4pA	408	31.18	c.1.8.3	90617
2q6kA	283	31.66		
1q33A	292	34.31	d.113.1.1	95657
1bkpA	278	34.74	d.117.1.1	41029
1kk1A	410	35.56	b.43.3.1,b.44.1.1,c.37.1.8	72634,72635,72636
1wraA	308	36.54	d.157.1.8	121190
1ct5A	256	41.18	c.1.6.2	28663
1gph1	465	41.24		
1s0uA	408	44.33	b.43.3.1,b.44.1.1,c.37.1.8	98302,98303,98304
2guiA	194	44.46	c.55.3.5	135737
1ckmA	330	44.82	b.40.4.6,d.142.2.3	25358,41585
2zbvA	263	47.21		
2e7fA	262	47.46		
1ta9A	450	49.60		
1egaA	301	49.84	c.37.1.8,d.52.3.1	32150,38836
1puiA	210	50.53	c.37.1.8	88292
1p16A	395	56.14	b.40.4.6,d.142.2.3	87661,87662
1f6yA	262	56.34	c.1.21.2	29673
1se8A	301	57.82	b.40.4.3	105448
2jbmA	299	58.32		
2ikkA	173	63.46		
2igbA	179	65.95		
1vb3A	428	70.38	c.79.1.1	119942
3bs5B	80	70.94		
1j53A	186	71.44	c.55.3.5	77076
1sviA	195	74.32	c.37.1.8	106048
2pd2A	108	76.49		
1ad4A	266	76.92	c.1.21.1	29670
1z7yA	322	78.48	c.79.1.1	124679
2yzkA	178	82.15		
2p19A	149	85.20