# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ozfA 92 2.90e-16 1g9oA 91 3.33e-16 b.36.1.1 60400 2fe5A 94 3.40e-15 b.36.1.1 133323 2jilA 97 5.02e-15 2iwnA 97 5.19e-15 2opgA 98 5.78e-15 2egoA 96 8.23e-15 2jikA 101 8.43e-15 2he4A 90 1.14e-14 2qg1A 92 1.63e-14 2i1nA 102 1.68e-14 2awxA 105 2.71e-14 2gzvA 114 2.91e-14 1q3oA 109 3.11e-14 b.36.1.1 95700 1i92A 91 3.29e-14 b.36.1.1 61990 2fneA 117 3.72e-14 b.36.1.1 133813 2f5yA 91 4.28e-14 b.36.1.1 133015 1n7eA 97 4.83e-14 b.36.1.1 91691 1qavA 90 5.47e-14 b.36.1.1 24777 2pktA 91 7.08e-14 2h2bA 107 7.93e-14 2uzcA 88 7.95e-14 1m5zA 91 8.17e-14 b.36.1.1 78676 1tp5A 119 1.18e-13 b.36.1.1 119305 2he2A 102 1.50e-13 2ocsA 88 1.93e-13 2q3gA 89 1.99e-13 1ihjA 98 2.07e-13 b.36.1.1 62382 1nf3C 128 2.18e-13 b.36.1.1 85596 2h3lA 103 2.60e-13 b.36.1.1 136046 1be9A 119 3.72e-13 b.36.1.1 24774 1pdr 99 4.38e-13 1x45A 98 4.49e-13 b.36.1.1 121679 1mfgA 95 6.14e-13 b.36.1.1 79043 2fcfA 103 6.99e-13 b.36.1.1 133267 1wf7A 103 1.10e-12 b.36.1.1 114577 1r6jA 82 1.88e-12 b.36.1.1 97151 2qkvA 96 2.57e-12 2i04A 85 3.67e-12 2iwoA 120 4.63e-12 1qauA 112 5.43e-12 b.36.1.1 24779 1l6oA 95 5.49e-12 b.36.1.1 84534 1kwaA 88 1.35e-11 b.36.1.1 24772 2q9vA 90 1.87e-11 2pa1A 87 5.16e-11 2f0aA 98 6.66e-11 b.36.1.1 132661 2reyA 100 8.46e-11 2vphA 100 2.84e-10 2eaqA 90 3.32e-10 1v5lA 103 3.57e-10 b.36.1.1 108378 1qavB 115 4.04e-10 b.36.1.1 24780 1fc6A 388 8.12e-10 b.36.1.3,c.14.1.2 64738,64739 1b8qA 127 1.48e-09 b.36.1.1 24781 3bpuA 88 4.61e-09 2rczA 81 1.05e-08 2p3wA 112 6.65e-07 1lcyA 325 8.13e-07 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 1.32e-06 b.36.1.4,b.47.1.1 112400,112401 2i6vA 87 1.82e-06 1y8tA 324 4.09e-06 b.36.1.4,b.47.1.1 122763,122764 1n6eA 1071 0.004516 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1ky9A 448 0.008671 b.36.1.4,b.47.1.1 73198,73199 1k32A 1045 0.02864 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1sotA 320 1.173 b.36.1.4,b.47.1.1 105852,105853 1lh0A 213 1.981 c.61.1.1 73896 2dy0A 190 2.462 2ps1A 226 2.516 1opr 213 4.806 3bdiA 207 7.278 1y0bA 197 7.542 c.61.1.1 122476 2bkfA 87 9.199 d.15.2.2 128699 2dstA 131 10.96 1ha1 184 14.13 1o6dA 163 15.07 c.116.1.3 92567 2gf9A 189 17.57 2j3tD 219 18.27 3sxlA 184 18.74 d.58.7.1,d.58.7.1 39173,39174 1yioA 208 19.53 a.4.6.2,c.23.1.1 123326,123327 1cjwA 166 19.58 d.108.1.1 40818 2qyaA 124 20.24 1z2aA 168 20.32 c.37.1.8 124374 1wj6A 101 20.76 d.15.2.2 114693 1g2qA 187 20.91 c.61.1.1 65117 1ao3A 187 21.43 c.62.1.1 34134 1fxlA 167 25.82 d.58.7.1,d.58.7.1 39183,39184 1oixA 191 25.92 c.37.1.8 118710 1oroA 213 27.00 c.61.1.1 34093 1u94A 356 27.73 c.37.1.11,d.48.1.1 107743,107744 1ne9A 335 28.42 d.108.1.4,d.108.1.4 91839,91840 2f9lA 199 31.55 c.37.1.8 133166 2h7aA 110 34.44 2yvaA 196 35.09 1cq3A 233 37.08 b.27.1.1 23923 2bexA 460 37.10 c.10.1.1 128398 1yvkA 163 37.29 d.108.1.1 124101 2r7hA 177 38.80 1zn8A 180 38.99 c.61.1.1 125376 1qw2A 102 39.21 d.249.1.1 96456 1tiqA 180 40.28 d.108.1.1 107010 1a3cA 181 40.54 c.61.1.1 34095 1q0rA 298 41.69 c.69.1.28 95508 1l3kA 196 42.73 d.58.7.1,d.58.7.1 73539,73540 2bcgY 206 43.21 c.37.1.8 128285 1qm4A 396 43.23 d.130.1.1,d.130.1.1,d.130.1.1 41350,41351,41352 2raaA 204 45.24 2aexA 346 47.35 2g6bA 180 47.62 c.37.1.8 134701 2a3nA 355 47.69 1kuxA 207 48.49 d.108.1.1 73021 2bswA 146 48.68 d.108.1.1 129127 1w1wA 430 49.35 c.37.1.12 114080 2dvzA 314 50.44 1ng5A 215 50.95 b.100.1.1 91867 2e3jA 356 52.22 1vc3B 97 54.71 2o38A 120 56.30 2izzA 322 57.67 1s3zA 165 57.85 d.108.1.1 105250 1z0jA 170 57.95 c.37.1.8 124319 2yzsA 315 59.34 2pocA 367 60.82 1a62A 130 60.87 a.140.3.1,b.40.4.5 64708,64709 1luzA 88 61.62 b.40.4.5 74271 1z4eA 153 61.93 d.108.1.1 124431 2o2gA 223 65.19 2dxqA 150 65.80 1b6bA 174 65.90 d.108.1.1 40819 1y0eA 223 66.92 c.1.2.5 116297 2jdcA 146 67.08 1pl8A 356 68.07 b.35.1.2,c.2.1.1 94878,94879 1tk9A 188 68.22 c.80.1.3 107082 1n3yA 198 68.39 c.62.1.1 79976 1vimA 200 68.47 c.80.1.3 100758 2cw5A 255 68.67 2epgA 487 69.37 2b8eA 273 69.52 c.108.1.7,d.220.1.1 128068,128069 1wmhA 89 71.12 d.15.2.2 114744 2iyvA 184 74.19 c.37.1.2 137812 1xqwA 293 75.45 2c3zA 222 76.91 1viaA 175 79.41 c.37.1.2 100754 2orwA 184 79.51 1mtzA 293 80.96 c.69.1.7 79467 1cvjA 190 81.96 d.58.7.1,d.58.7.1 39191,39192 3cbnA 151 85.30 2z0tA 109 87.28 1wwzA 159 88.55 d.108.1.1 121380 1qstA 160 89.17 d.108.1.1 40804 2fe7A 166 89.37 d.108.1.1 133325 1l0cA 207 89.74 d.108.1.1 73393