# List of top-scoring protein chains for T0387.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2he2A 102 5.61e-09 1um7A 113 1.30e-08 b.36.1.1 99579 2dkrA 93 1.67e-08 1rgrA 99 1.89e-08 b.36.1.1 104931 1g9oA 91 2.00e-08 b.36.1.1 60400 1gq5A 91 2.04e-08 b.36.1.1 76274 1i92A 91 2.11e-08 b.36.1.1 61990 1kefA 93 2.32e-08 b.36.1.1 72369 1gq4A 90 2.37e-08 b.36.1.1 70340 2i1nA 102 2.79e-08 1iu0A 91 2.97e-08 b.36.1.1 83707 1zokA 93 3.10e-08 b.36.1.1 125451 2enoA 120 3.27e-08 2jikA 101 3.56e-08 2r4hA 112 3.87e-08 2he4A 90 3.89e-08 2jinA 102 3.96e-08 1pdrA 99 4.30e-08 b.36.1.1 24771 1x5qA 110 5.18e-08 b.36.1.1 121717 2dm8A 116 5.26e-08 2ocsA 88 5.42e-08 1tp5A 119 5.80e-08 b.36.1.1 119305 1be9A 119 6.39e-08 b.36.1.1 24774 1wfvA 103 7.93e-08 b.36.1.1 114594 2i0iA 85 7.94e-08 b.36.1.1 136953 2ozfA 92 8.40e-08 1d5gA 96 8.90e-08 b.36.1.1 70080 2bygA 117 1.10e-07 b.36.1.1 129480 2jilA 97 1.13e-07 1vj6A 102 1.16e-07 b.36.1.1 120064 1gm1A 94 1.17e-07 b.36.1.1 70271 2fneA 117 1.18e-07 b.36.1.1 133813 2opgA 98 1.25e-07 2d90A 102 1.32e-07 1whaA 105 1.43e-07 b.36.1.1 114638 2fcfA 103 1.49e-07 b.36.1.1 133267 2iwqA 123 1.52e-07 2awxA 105 1.62e-07 1uezA 101 1.78e-07 b.36.1.1 99286 2dc2A 103 1.78e-07 1uhpA 107 1.96e-07 b.36.1.1 99400 2djtA 104 2.10e-07 2g2lA 105 2.16e-07 2awwA 105 2.24e-07 2pktA 91 2.32e-07 2qg1A 92 2.36e-07 2fe5A 94 2.42e-07 b.36.1.1 133323 2awuA 105 2.56e-07 2oqsA 97 3.25e-07 1wf8A 107 3.59e-07 b.36.1.1 120967 2v90A 96 3.83e-07 1uewA 114 3.85e-07 b.36.1.1 99281 2dazA 124 3.98e-07 2eeiA 106 4.04e-07 2ogpA 97 4.33e-07 1z87A 263 4.51e-07 1qavA 90 4.69e-07 b.36.1.1 24777 1qlcA 95 5.02e-07 b.36.1.1 24776 2fn5A 94 5.25e-07 2vrfA 95 5.52e-07 1uf1A 128 5.74e-07 b.36.1.1 99288 1z86A 87 5.94e-07 b.36.1.1 124690 2pdzA 86 6.37e-07 b.36.1.1 24778 2iwoA 120 6.62e-07 2v1wA 90 6.93e-07 1um1A 110 7.95e-07 b.36.1.1 99578 2g5mB 113 8.18e-07 2dmzA 129 8.44e-07 2ehrA 117 8.64e-07 1q7xA 108 8.85e-07 b.36.1.1 96059 2edzA 114 8.92e-07 2eejA 96 1.01e-06 1ueqA 123 1.09e-06 b.36.1.1 99271 1oziA 99 1.18e-06 b.36.1.1 93845 2o2tA 117 1.32e-06 1vb7A 94 1.34e-06 b.36.1.1 108474 2eegA 94 1.34e-06 2omjA 89 1.38e-06 2uzcA 88 1.38e-06 2iwnA 97 1.43e-06 1n7eA 97 1.57e-06 b.36.1.1 91691 2i0lA 84 1.75e-06 2pa1A 87 1.80e-06 1wi2A 104 1.83e-06 b.36.1.1 114659 2yuyA 126 1.86e-06 2dluA 111 2.09e-06 1q3oA 109 2.28e-06 b.36.1.1 95700 1ujuA 111 2.32e-06 b.36.1.1 99469 1ihjA 98 2.49e-06 b.36.1.1 62382 1b8qA 127 2.67e-06 b.36.1.1 24781 1v5lA 103 2.69e-06 b.36.1.1 108378 1wf7A 103 2.71e-06 b.36.1.1 114577 1qavB 115 2.71e-06 b.36.1.1 24780 1t2mA 101 2.77e-06 b.36.1.1 119133 2f5yA 91 3.07e-06 b.36.1.1 133015 2d92A 108 3.09e-06 2q9vA 90 3.27e-06 1xz9A 101 3.33e-06 b.36.1.1 122471 1qauA 112 3.56e-06 b.36.1.1 24779 2csjA 117 3.71e-06 b.36.1.1 130771 2ainA 93 3.81e-06 2eehA 100 3.83e-06 1rgwA 85 3.91e-06 b.36.1.1 97455 1uepA 103 4.04e-06 b.36.1.1 99270 2q3gA 89 4.34e-06 1wjlA 90 4.36e-06 b.36.1.1 114701 1uitA 117 4.40e-06 b.36.1.1 99433 1x5nA 114 5.09e-06 b.36.1.1 121714 1whdA 100 5.18e-06 b.36.1.1 114641 2reyA 100 5.54e-06 2dlsA 93 5.98e-06 1x5rA 112 6.07e-06 b.36.1.1 121718 1x8sA 102 6.11e-06 b.36.1.1 114967 1ry4A 128 6.60e-06 b.36.1.1 98085 1m5zA 91 6.98e-06 b.36.1.1 78676 1rzxA 98 7.14e-06 b.36.1.1 98236 1x6dA 119 7.36e-06 b.36.1.2 121739 2f0aA 98 8.07e-06 b.36.1.1 132661 3b76A 118 8.07e-06 1w9eA 166 8.11e-06 b.36.1.1,b.36.1.1 120779,120780 2db5A 128 8.30e-06 1wg6A 127 8.30e-06 b.36.1.1 114603 1l6oA 95 8.35e-06 b.36.1.1 84534 3bpuA 88 9.37e-06 1mfgA 95 9.77e-06 b.36.1.1 79043 2i04A 85 1.09e-05 1mc7A 95 1.10e-05 b.36.1.1 91241 2h3lA 103 1.14e-05 b.36.1.1 136046 2h2cA 107 1.14e-05 2h2bA 107 1.15e-05 1v62A 117 1.34e-05 b.36.1.1 108390 2jweA 88 1.38e-05 2h3mA 97 1.43e-05 2qbwA 195 1.47e-05 1i16A 130 1.48e-05 b.36.1.2 24787 2rczA 81 1.52e-05 1wh1A 124 1.60e-05 b.36.1.1 114629 1nf3C 128 1.72e-05 b.36.1.1 85596 2egkA 101 2.10e-05 2vphA 100 2.35e-05 2egoA 96 2.36e-05 2pntA 98 2.42e-05 2osgA 83 2.48e-05 1v5qA 122 2.53e-05 b.36.1.1 108383 2cs5A 119 2.54e-05 b.36.1.1 130747 1kwaA 88 2.61e-05 b.36.1.1 24772 2pkuA 87 2.85e-05 1p1eA 101 2.88e-05 b.36.1.1 93898 2gzvA 114 2.93e-05 2ev8A 97 3.24e-05 1p1dA 196 3.83e-05 b.36.1.1,b.36.1.1 93896,93897 2ejyA 97 3.97e-05 1ujvA 96 4.18e-05 b.36.1.1 99470 1wi4A 109 4.44e-05 b.36.1.1 120973 1u3bA 185 5.94e-05 b.36.1.1,b.36.1.1 119508,119509 2cssA 121 7.22e-05 b.36.1.1 130780 2edvA 96 7.90e-05 2edpA 100 8.25e-05 1ujdA 117 8.40e-05 b.36.1.1 99454 1y7nA 90 1.00e-04 b.36.1.1 122700 1va8A 113 0.000102 b.36.1.1 119903 2yt8A 94 0.000103 1wfgA 131 0.000107 b.36.1.1 114581 1u39A 80 0.000109 b.36.1.1 119503 1vaeA 111 0.000127 b.36.1.1 108466 1u37A 89 0.000146 b.36.1.1 119501 1x45A 98 0.000148 b.36.1.1 121679 1zubA 114 0.000150 b.36.1.1 125665 1ufxA 103 0.000241 b.36.1.1 99359 2yt7A 101 0.000258 2qktA 90 0.000376 1v6bA 118 0.000413 b.36.1.1 108394 2qkvA 96 0.000489 1r6jA 82 0.000498 b.36.1.1 97151 2eaqA 90 0.000511 2e7kA 91 0.000844 1obxA 79 0.000861 b.36.1.1 86783 1wifA 126 0.001149 b.36.1.1 114669 2d8iA 114 0.002358 2yubA 118 0.005735 2ytwA 118 0.006368 2joaA 105 0.006651 2p3wA 112 0.01728 2pzdA 113 0.02147 1fc6A 388 0.06076 b.36.1.3,c.14.1.2 64738,64739 1fc9A 388 0.08074 b.36.1.3,c.14.1.2 64742,64743 1ky9A 448 0.1546 b.36.1.4,b.47.1.1 73198,73199 1lcyA 325 0.1793 b.36.1.4,b.47.1.1 73834,73835 1sotA 320 0.7456 b.36.1.4,b.47.1.1 105852,105853 1te0A 318 0.7475 b.36.1.4,b.47.1.1 112400,112401 1sozA 314 0.7512 b.36.1.4,b.47.1.1 105859,105860 1y8tA 324 0.8345 b.36.1.4,b.47.1.1 122763,122764 2hgaA 125 1.079 2dy0A 190 25.55 1ao0A 459 29.00 c.61.1.1,d.153.1.1 34049,41816 1gph1 465 29.08 2bh4X 134 33.33 1zn8A 180 36.26 c.61.1.1 125376 2bgvX 134 36.43 1db3A 372 43.78 c.2.1.2 29813 1hvyA 288 44.94 d.117.1.1 41049 1hzwA 290 45.34 d.117.1.1 61464 2plnA 137 45.34 1hw3A 313 45.75 d.117.1.1 41053 1ju6A 313 47.57 d.117.1.1 63289 1hw4A 355 47.58 d.117.1.1 41054 1ypvA 313 47.71 1x6vA 630 51.75 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2j3tD 219 54.44 2ps1A 226 58.42 2hqoA 123 61.16 1lnzA 342 61.79 b.117.1.1,c.37.1.8 78112,78113 1e6vC 258 67.52 d.58.31.1 39439 1mzvA 235 70.21 c.61.1.1 91502 2tsrA 307 73.63 d.117.1.1 41043 1bx4A 345 80.93 c.72.1.1 34935 1cotA 129 85.63 a.3.1.1 15899 2cucA 70 85.77 1vpqA 273 86.80 c.1.32.1 113974