# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g9oA 91 6.61e-14 b.36.1.1 60400 2he2A 102 1.32e-13 2he4A 90 1.33e-13 2ozfA 92 1.68e-13 1tp5A 119 1.75e-13 b.36.1.1 119305 2v90A 96 2.65e-13 2ocsA 88 5.35e-13 2fneA 117 5.44e-13 b.36.1.1 133813 2qg1A 92 5.87e-13 2awxA 105 6.17e-13 2iwnA 97 6.74e-13 2i1nA 102 7.95e-13 2fe5A 94 9.10e-13 b.36.1.1 133323 2opgA 98 9.65e-13 2f5yA 91 1.42e-12 b.36.1.1 133015 2jikA 101 1.51e-12 2jilA 97 1.54e-12 1qauA 112 1.57e-12 b.36.1.1 24779 1nf3C 128 1.70e-12 b.36.1.1 85596 2pa1A 87 1.85e-12 1n7eA 97 2.11e-12 b.36.1.1 91691 1qavA 90 2.33e-12 b.36.1.1 24777 2pktA 91 2.50e-12 1q3oA 109 2.58e-12 b.36.1.1 95700 2uzcA 88 2.59e-12 2q3gA 89 2.64e-12 2iwoA 120 4.30e-12 1kwaA 88 4.54e-12 b.36.1.1 24772 2qkvA 96 4.98e-12 2egoA 96 6.42e-12 1ihjA 98 6.63e-12 b.36.1.1 62382 2q9vA 90 7.63e-12 2fcfA 103 7.63e-12 b.36.1.1 133267 1wf7A 103 8.66e-12 b.36.1.1 114577 2i04A 85 9.47e-12 2h2bA 107 9.67e-12 1fc6A 388 1.28e-11 b.36.1.3,c.14.1.2 64738,64739 2f0aA 98 1.50e-11 b.36.1.1 132661 2reyA 100 1.89e-11 1x45A 98 1.90e-11 b.36.1.1 121679 2vphA 100 2.07e-11 1r6jA 82 2.11e-11 b.36.1.1 97151 2eaqA 90 3.18e-11 2gzvA 114 5.87e-11 2h3lA 103 7.81e-11 b.36.1.1 136046 3bpuA 88 1.17e-10 1mfgA 95 1.65e-10 b.36.1.1 79043 2rczA 81 3.60e-10 1y8tA 324 1.32e-06 b.36.1.4,b.47.1.1 122763,122764 2p3wA 112 2.41e-06 1te0A 318 6.96e-06 b.36.1.4,b.47.1.1 112400,112401 1lcyA 325 2.25e-05 b.36.1.4,b.47.1.1 73834,73835 1j7xA 302 0.000863 c.14.1.2 66425 1k32A 1045 0.004250 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2i6vA 87 0.8553 2g8oA 264 4.403 d.117.1.1 134779 2g8mA 264 5.087 1bkpA 278 5.731 d.117.1.1 41029 1ypvA 313 7.070 1w30A 201 9.846 c.61.1.1 114118 2zbvA 263 10.59 1qqqA 264 13.63 d.117.1.1 40931 2q6kA 283 14.46 2cw5A 255 14.51 2f4nA 273 17.58 1u9yA 284 18.73 c.61.1.2,c.61.1.2 119655,119656 1g2qA 187 18.92 c.61.1.1 65117 1l1qA 186 19.59 c.61.1.1 77653 1mi8A 158 21.82 b.86.1.2 91279 2adzA 178 21.92 b.55.1.1 126599 2og9A 393 21.98 1f5nA 592 22.10 a.114.1.1,c.37.1.8 19077,32152 2igbA 179 22.33 1ev5A 264 22.96 d.117.1.1 40935 1v9sA 208 23.70 c.61.1.1 119894 1f28A 297 26.51 d.117.1.1 59608 1dkuA 317 26.83 c.61.1.2,c.61.1.2 34118,34119 1rqpA 299 28.23 b.141.1.1,c.132.1.1 97754,97755 1l3kA 196 28.92 d.58.7.1,d.58.7.1 73539,73540 2i62A 265 31.22 4dfrA 159 31.99 c.71.1.1 34822 2j3tD 219 33.30 2gsmB 262 33.86 b.6.1.2,f.17.2.1 135590,135591 1h5rA 293 35.40 c.68.1.6 65623 2jbhA 225 39.42 2p1zA 180 39.44 1a3c 181 42.20 1ra9 159 48.43 1dmgA 225 48.51 c.22.1.1 31036 1lh0A 213 49.26 c.61.1.1 73896 1vctA 205 50.05 a.7.12.1,d.286.1.1 119986,119987 1fi2A 201 50.74 b.82.1.2 59845 1cjbA 231 51.31 c.61.1.1 34079 3bs5A 106 51.58 1l5jA 865 53.65 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 1oroA 213 53.83 c.61.1.1 34093 2hcrA 326 57.65 2yzkA 178 59.84 2vesA 299 60.05 1zn8A 180 60.29 c.61.1.1 125376 2gm5A 139 61.48 1vchA 175 64.98 c.61.1.1 119980 1y0bA 197 71.12 c.61.1.1 122476 2rdyA 803 72.14 1c9oA 66 75.82 b.40.4.5 25325 2z1cA 75 78.33 1fitA 147 79.03 d.13.1.1 37499 1s98A 107 79.22 b.124.1.1 105377 1p2fA 220 79.80 a.4.6.1,c.23.1.1 87720,87721 1oj7A 408 84.25 e.22.1.2 103971 2nwhA 317 84.30 2pbtA 134 87.30 2ad9A 119 87.43 d.58.7.1 126580 2rslA 140 89.37 c.53.1.1 33345