# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g9oA 91 1.49e-14 b.36.1.1 60400 2he2A 102 2.90e-14 1tp5A 119 3.82e-14 b.36.1.1 119305 2he4A 90 4.44e-14 2ozfA 92 4.68e-14 2v90A 96 8.74e-14 2ocsA 88 9.57e-14 2i1nA 102 1.15e-13 2fneA 117 1.18e-13 b.36.1.1 133813 2awxA 105 1.34e-13 2fe5A 94 1.42e-13 b.36.1.1 133323 2iwnA 97 1.79e-13 2jikA 101 1.94e-13 2qg1A 92 2.02e-13 2f5yA 91 2.80e-13 b.36.1.1 133015 1qauA 112 3.00e-13 b.36.1.1 24779 1n7eA 97 3.36e-13 b.36.1.1 91691 2jilA 97 3.74e-13 2opgA 98 3.76e-13 2pktA 91 4.16e-13 2q3gA 89 4.29e-13 1qavA 90 4.30e-13 b.36.1.1 24777 1nf3C 128 4.49e-13 b.36.1.1 85596 2pa1A 87 4.80e-13 2uzcA 88 5.15e-13 2qkvA 96 5.18e-13 1q3oA 109 7.01e-13 b.36.1.1 95700 1wf7A 103 9.70e-13 b.36.1.1 114577 1kwaA 88 1.11e-12 b.36.1.1 24772 2q9vA 90 1.20e-12 2iwoA 120 1.21e-12 1ihjA 98 1.31e-12 b.36.1.1 62382 2fcfA 103 1.62e-12 b.36.1.1 133267 2i04A 85 1.62e-12 2egoA 96 1.75e-12 2h2bA 107 2.25e-12 1fc6A 388 2.62e-12 b.36.1.3,c.14.1.2 64738,64739 1x45A 98 2.93e-12 b.36.1.1 121679 2reyA 100 3.07e-12 2f0aA 98 3.73e-12 b.36.1.1 132661 2vphA 100 3.83e-12 1r6jA 82 4.27e-12 b.36.1.1 97151 2gzvA 114 7.19e-12 2rczA 81 8.25e-12 2eaqA 90 1.20e-11 2h3lA 103 1.72e-11 b.36.1.1 136046 1mfgA 95 2.29e-11 b.36.1.1 79043 3bpuA 88 3.36e-11 1y8tA 324 4.57e-07 b.36.1.4,b.47.1.1 122763,122764 2p3wA 112 1.93e-06 1te0A 318 3.30e-06 b.36.1.4,b.47.1.1 112400,112401 1lcyA 325 1.64e-05 b.36.1.4,b.47.1.1 73834,73835 1j7xA 302 0.000668 c.14.1.2 66425 1k32A 1045 0.001859 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2i6vA 87 0.2224 2g8oA 264 7.991 d.117.1.1 134779 1l3kA 196 8.470 d.58.7.1,d.58.7.1 73539,73540 1bkpA 278 8.768 d.117.1.1 41029 2g8mA 264 9.298 1w30A 201 9.779 c.61.1.1 114118 2zbvA 263 9.808 1qqqA 264 13.55 d.117.1.1 40931 2cw5A 255 15.20 2igbA 179 15.68 2q6kA 283 17.18 2adzA 178 17.62 b.55.1.1 126599 1ypvA 313 18.76 1u9yA 284 19.00 c.61.1.2,c.61.1.2 119655,119656 1l1qA 186 20.55 c.61.1.1 77653 1ev5A 264 21.38 d.117.1.1 40935 2jbhA 225 22.04 2f4nA 273 22.87 1a3c 181 23.12 1dkuA 317 23.47 c.61.1.2,c.61.1.2 34118,34119 1g2qA 187 23.70 c.61.1.1 65117 1rqpA 299 25.56 b.141.1.1,c.132.1.1 97754,97755 2vesA 299 32.11 1oroA 213 32.29 c.61.1.1 34093 1dmgA 225 38.62 c.22.1.1 31036 2j3tD 219 39.03 2og9A 393 39.08 2hcrA 326 40.76 1mi8A 158 43.15 b.86.1.2 91279 1lh0A 213 43.40 c.61.1.1 73896 2p1zA 180 43.74 1fitA 147 46.71 d.13.1.1 37499 1wd5A 208 48.61 c.61.1.1 114524 1f28A 297 50.07 d.117.1.1 59608 2gsmB 262 50.38 b.6.1.2,f.17.2.1 135590,135591 1v9sA 208 52.07 c.61.1.1 119894 1c9oA 66 55.97 b.40.4.5 25325 1zlqA 502 57.45 c.94.1.1 125253 1vchA 175 59.07 c.61.1.1 119980 2rdyA 803 59.75 1cjbA 231 60.57 c.61.1.1 34079 2o38A 120 60.92 1ra9 159 63.11 2d5wA 603 63.67 3bs5A 106 65.08 2v40A 459 69.72 1a3cA 181 72.89 c.61.1.1 34095 1p2fA 220 73.42 a.4.6.1,c.23.1.1 87720,87721 4dfrA 159 73.57 c.71.1.1 34822 1f5nA 592 79.91 a.114.1.1,c.37.1.8 19077,32152 1t6t1 118 80.17 1vctA 205 84.00 a.7.12.1,d.286.1.1 119986,119987 1p42A 270 84.27 d.14.1.7,d.14.1.7 87754,87755 3bpkA 206 85.98 1eceA 358 86.30 c.1.8.3 28813 1fi2A 201 86.77 b.82.1.2 59845 2go3A 267 88.23 d.14.1.7,d.14.1.7 135422,135423 1b5eA 246 89.72 d.117.1.1 41056