# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g9oA 91 7.97e-14 b.36.1.1 60400 2ozfA 92 1.25e-13 1tp5A 119 1.37e-13 b.36.1.1 119305 2he4A 90 1.49e-13 2v90A 96 1.90e-13 2he2A 102 2.10e-13 2ocsA 88 4.72e-13 2fneA 117 6.59e-13 b.36.1.1 133813 1n7eA 97 7.46e-13 b.36.1.1 91691 2jikA 101 7.60e-13 2iwnA 97 8.84e-13 2q3gA 89 1.01e-12 2i1nA 102 1.14e-12 2qg1A 92 1.18e-12 2awxA 105 1.20e-12 2fe5A 94 1.26e-12 b.36.1.1 133323 2opgA 98 1.27e-12 1nf3C 128 1.65e-12 b.36.1.1 85596 2f5yA 91 2.03e-12 b.36.1.1 133015 2jilA 97 2.10e-12 1qavA 90 2.15e-12 b.36.1.1 24777 2pktA 91 2.21e-12 2uzcA 88 2.25e-12 2pa1A 87 2.31e-12 1qauA 112 2.47e-12 b.36.1.1 24779 1q3oA 109 2.55e-12 b.36.1.1 95700 1wf7A 103 2.64e-12 b.36.1.1 114577 2egoA 96 3.76e-12 1kwaA 88 4.96e-12 b.36.1.1 24772 2qkvA 96 5.37e-12 2iwoA 120 6.00e-12 1fc6A 388 6.47e-12 b.36.1.3,c.14.1.2 64738,64739 2q9vA 90 7.00e-12 1ihjA 98 7.79e-12 b.36.1.1 62382 2fcfA 103 1.18e-11 b.36.1.1 133267 1r6jA 82 1.20e-11 b.36.1.1 97151 2h2bA 107 1.31e-11 2i04A 85 1.46e-11 1x45A 98 1.66e-11 b.36.1.1 121679 2f0aA 98 1.71e-11 b.36.1.1 132661 2vphA 100 2.05e-11 2rczA 81 2.49e-11 2gzvA 114 2.70e-11 2h3lA 103 3.80e-11 b.36.1.1 136046 2reyA 100 4.12e-11 2eaqA 90 4.71e-11 1mfgA 95 1.37e-10 b.36.1.1 79043 3bpuA 88 1.75e-10 1y8tA 324 1.68e-06 b.36.1.4,b.47.1.1 122763,122764 2p3wA 112 1.80e-06 1lcyA 325 1.20e-05 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 1.22e-05 b.36.1.4,b.47.1.1 112400,112401 1k32A 1045 0.000677 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 0.003013 c.14.1.2 66425 2i6vA 87 0.09448 1g2qA 187 2.777 c.61.1.1 65117 2zbvA 263 4.487 1zn8A 180 5.958 c.61.1.1 125376 2aeeA 211 6.102 c.61.1.1 126620 1rqpA 299 6.173 b.141.1.1,c.132.1.1 97754,97755 2cw5A 255 8.192 1f28A 297 8.459 d.117.1.1 59608 1u9yA 284 8.836 c.61.1.2,c.61.1.2 119655,119656 1vchA 175 10.09 c.61.1.1 119980 2j3tD 219 10.96 1y0bA 197 11.06 c.61.1.1 122476 1cjbA 231 11.18 c.61.1.1 34079 2f4nA 273 11.24 1l1qA 186 11.78 c.61.1.1 77653 2p1zA 180 11.90 2z1cA 75 11.97 1aj2A 282 13.39 c.1.21.1 29665 1dkuA 317 14.93 c.61.1.2,c.61.1.2 34118,34119 2dpyA 438 15.81 1ypvA 313 16.05 1vs0A 310 16.16 1bkpA 278 17.00 d.117.1.1 41029 1vctA 205 17.18 a.7.12.1,d.286.1.1 119986,119987 1o57A 291 17.39 a.4.5.40,c.61.1.1 92483,92484 2g8oA 264 17.68 d.117.1.1 134779 2q6kA 283 18.11 2o38A 120 18.56 2g8mA 264 18.56 2jbhA 225 20.41 1mi8A 158 20.62 b.86.1.2 91279 2hcrA 326 23.08 2a6cA 83 24.82 a.35.1.13 126236 2pi6A 361 27.15 1i0lA 221 27.18 c.61.1.1 71096 1eceA 358 27.66 c.1.8.3 28813 1oj7A 408 27.95 e.22.1.2 103971 1hgxA 183 28.94 c.61.1.1 34027 1fsgA 233 30.83 c.61.1.1 34029 1ad1A 266 31.14 c.1.21.1 29668 1kgsA 225 31.76 a.4.6.1,c.23.1.1 68596,68597 1t6t1 118 32.12 1wd5A 208 32.33 c.61.1.1 114524 2gebA 185 35.19 1l3kA 196 36.14 d.58.7.1,d.58.7.1 73539,73540 2e55A 208 38.17 2igbA 179 39.33 2plcA 274 39.87 c.1.18.2 29614 2aefA 234 40.34 1w30A 201 42.43 c.61.1.1 114118 2yzkA 178 42.77 1z7gA 217 43.47 c.61.1.1 124624 3bs5A 106 45.41 1a3c 181 45.61 1dmgA 225 46.65 c.22.1.1 31036 2vefA 314 47.49 1fr3A 67 48.66 b.40.6.1 25436 2hykA 245 49.23 2acfA 182 50.53 c.50.1.2 126547 2gsmB 262 50.78 b.6.1.2,f.17.2.1 135590,135591 2v95A 371 50.87 1mvoA 136 52.61 c.23.1.1 79513 1yioA 208 53.41 a.4.6.2,c.23.1.1 123326,123327 1srrA 124 55.08 c.23.1.1 31110 1tx2A 297 55.37 c.1.21.1 107420 1vdmA 153 56.78 c.61.1.1 119994 1ys7A 233 57.58 a.4.6.1,c.23.1.1 123961,123962 3dfrA 162 58.50 c.71.1.1 34880 1o4uA 285 60.98 c.1.17.1,d.41.2.1 86624,86625 1fi2A 201 62.83 b.82.1.2 59845 3bpkA 206 63.57 1qqqA 264 64.98 d.117.1.1 40931 1yxaA 398 65.51 1xm7A 195 67.04 d.159.1.8 115473 1k2xB 143 67.78 1at0 145 68.05 1eovA 487 68.20 b.40.4.1,d.104.1.1 25239,40760 3bs7A 78 68.66 1l7bA 92 69.84 c.15.1.2 91053 2yzqA 282 70.05 1fitA 147 71.82 d.13.1.1 37499 2ywuA 181 72.61 1tc1A 220 74.48 c.61.1.1 34083 1s8nA 205 75.67 c.23.1.1 105374 1pk1B 89 77.66 a.60.1.2 118712 2et1A 201 79.04 b.82.1.2 132351 2b4wA 315 79.25 b.67.2.5 127866 1dz3A 130 79.88 c.23.1.1 31105 2jfgA 445 80.63 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1ve2A 235 82.37 c.90.1.1 120008 1vmkA 277 82.50 c.56.2.1 113680 1a3cA 181 83.17 c.61.1.1 34095 3c7jA 237 85.25 1y4jA 284 85.94 d.169.1.7 122620 1dbwA 126 86.80 c.23.1.1 31095 3bofA 566 86.89 2ek5A 129 87.14 1s98A 107 88.55 b.124.1.1 105377